Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1748 ATGGAGGAAGATCAAATAGATAGATATGTAAGCGCGTATCTGAAGAAGAAAGGGTTTTCGCAAAACGAGGAGCTTCAAGCCGCCACCACCACCACCACCACCAACGACAACGATTCCTCTGCTAATAATTCTCTTCTTCAACCCCACATTCTCAATCGCGTCCTCGCTCACTCCCAACTGGAGAGTGGTCCTGCAAGATATCCTCATGGGTACGGAAGACTAAGATTGTGGGCATGTAGGTCACTAGACTTGTATAAGCATGAGTTACTATGTGTGCTTTATCCAGTATTTATCCACTGCTTCACGGATCTTGTCACAAAAGGGCATCTTCAAGAAGCTCGGAACTTTTTCAATACATTCCGTGAAGATCATGAAGGTAGGCACTTACGAGACCTTCAAAAGTTGGAAGCAGTTCTTTCTCCTACTCATCTGGAGGAAATGGAGTTCACTCATTCCCTAAGGCAGAGCAAATTCAACATAAAGATAAGCAGGTACTCCTATGAACTTCTGATGCAACATCTACATAGTACACAATCCACTACTATACTTGGTATAATCAATGAGCATATTAGCTTCCAAGTTACGTCTGGACAACCTAGCTCAATATCTGATGATACAGATGCTGTTTCCTTCACTGGAAGCATCCAGGATGCAACAAACCAGATAAATCAGAAAGAAATACTTTGGGGGTTGTTTGAAGACTCTCTTGAACATCGAGACAATGAAAAGGGTGAAGGGGAAGCCAAAGAAGGGGAGAATGAGGAGAGTAAGAAAAGGTCAGTGGATGGAGGAAAGCATGGTGGTTCAATTAAAAAGGTAAAAAAGGACAAGGCTGGAAGTGCAACAGGGAAAAGTGCAAAACCTGAAGCTAACACTGTATCTGCAGCACCTCGTGCTAAACCAGAAATTCCCCTGCCCACAGTTTCGACTGAGGTGGAGCTGTCCATCCTTGAAGATTTAAGGAATCGCATACAATGGAATAGTATTGCACTGCCATCGGTTAACTTCTACACATTCATCAATACAAATAATGGCTTAAACTGTTCATCAATATCCCATGATGGATCTTTGGTTGCTGGAGGATTTTCTGACTCATCAGTAAAGGTTTGGGATATGGCAAAGATCGGACAACAGCCCACCAATTCTCTTTCACAGGGAGAGAATGACAACTTGCAAAATGAACAGATGCTTGGGCAAAATGGAGGGAAAAGGCAGTACAAATTGTTTCAGGGTCATTCAGGGCCAGTTTACGCAGCCACTTTTAGTCCCCTTGGCGATTTTGTTCTTTCATCTTCAGCAGACAAAACAATTCGATTGTGGAGTACAAAGCTTAATGCCAATCTTGTTTGTTACAAGGGTCATAATTACCCTGTTTGGGATGTTCAGTTTAGTCCGGCAGGGCATTATTTTGCCAGCACTTCACATGACAGAACCGCTAGGATTTGGTCCATGGACAGAATACATCCCTTAAGAGTAATGGCAGGGCACTTGTCAGATGTTGATTGTGTGCAGTGGCATCCCAACTGCAACTACATTGCTACTGGCTCCAGTGACAGGTCAGTTCGATTATGGGATGTGCAGAGTGGGCAGAATGTTCGGGTTTTCAAGGGTCACAGGAGCATGATTTTGTCTTTGGCGATTTCTCCTGATGGTCGCTACATGGCATCTGGTGATGAAGATGGGACAATCATGATGTGGGACCTCTCTAGTGGCTGCTGCCTCACACCATTGATCGGTAACACTTCATGCGTCTGGTCGCTCGCTTTCAGCTGTGAAGGTTCTCTTCTAGCATCTGGATCTGCTGATTGCACTCTAAAATTTTGGGATGTAACTACTGGAATAAAGGTTCCAAGAAATGAAGAAAAAAGTGGGAATATTAGCAGACTCAGACCATTGAAAAGCCTATCAACCAAATCCACTTCAGTTCACTGTATGCAGTTTTCTCGACGGAATCTTCTTTTTGCAGCTGGAGCTCCTGCAAAAAGTGGCTAA 1992 0.4378 MEEDQIDRYVSAYLKKKGFSQNEELQAATTTTTTNDNDSSANNSLLQPHILNRVLAHSQLESGPARYPHGYGRLRLWACRSLDLYKHELLCVLYPVFIHCFTDLVTKGHLQEARNFFNTFREDHEGRHLRDLQKLEAVLSPTHLEEMEFTHSLRQSKFNIKISRYSYELLMQHLHSTQSTTILGIINEHISFQVTSGQPSSISDDTDAVSFTGSIQDATNQINQKEILWGLFEDSLEHRDNEKGEGEAKEGENEESKKRSVDGGKHGGSIKKVKKDKAGSATGKSAKPEANTVSAAPRAKPEIPLPTVSTEVELSILEDLRNRIQWNSIALPSVNFYTFINTNNGLNCSSISHDGSLVAGGFSDSSVKVWDMAKIGQQPTNSLSQGENDNLQNEQMLGQNGGKRQYKLFQGHSGPVYAATFSPLGDFVLSSSADKTIRLWSTKLNANLVCYKGHNYPVWDVQFSPAGHYFASTSHDRTARIWSMDRIHPLRVMAGHLSDVDCVQWHPNCNYIATGSSDRSVRLWDVQSGQNVRVFKGHRSMILSLAISPDGRYMASGDEDGTIMMWDLSSGCCLTPLIGNTSCVWSLAFSCEGSLLASGSADCTLKFWDVTTGIKVPRNEEKSGNISRLRPLKSLSTKSTSVHCMQFSRRNLLFAAGAPAKSG* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1748 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 339 372 IPR001680 GO:0005515
Dod08g1748 663 CDD TAF5_NTD2 64 195 IPR007582 -
Dod08g1748 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 451 492 IPR001680 GO:0005515
Dod08g1748 663 Gene3D - 488 661 IPR015943 GO:0005515
Dod08g1748 663 ProSitePatterns Trp-Asp (WD) repeats signature. 554 568 IPR019775 -
Dod08g1748 663 SUPERFAMILY Taf5 N-terminal domain-like 53 195 IPR037264 -
Dod08g1748 663 Gene3D TFIID subunit TAF5, NTD2 domain 47 195 IPR037264 -
Dod08g1748 663 ProSitePatterns Trp-Asp (WD) repeats signature. 512 526 IPR019775 -
Dod08g1748 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 577 618 IPR001680 GO:0005515
Dod08g1748 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 493 530 - -
Dod08g1748 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 409 441 - -
Dod08g1748 663 Pfam WD40 associated region in TFIID subunit, NTD2 domain 62 190 IPR007582 -
Dod08g1748 663 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 1 659 IPR037783 -
Dod08g1748 663 SUPERFAMILY WD40 repeat-like 332 657 IPR036322 GO:0005515
Dod08g1748 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 451 485 - -
Dod08g1748 663 ProSitePatterns Trp-Asp (WD) repeats signature. 358 372 IPR019775 -
Dod08g1748 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 535 571 - -
Dod08g1748 663 Gene3D - 207 487 IPR015943 GO:0005515
Dod08g1748 663 ProSitePatterns Trp-Asp (WD) repeats signature. 596 610 IPR019775 -
Dod08g1748 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 493 534 IPR001680 GO:0005515
Dod08g1748 663 Pfam WD domain, G-beta repeat 489 525 IPR001680 GO:0005515
Dod08g1748 663 Pfam WD domain, G-beta repeat 529 567 IPR001680 GO:0005515
Dod08g1748 663 Pfam WD domain, G-beta repeat 409 441 IPR001680 GO:0005515
Dod08g1748 663 Pfam WD domain, G-beta repeat 344 371 IPR001680 GO:0005515
Dod08g1748 663 Pfam WD domain, G-beta repeat 571 609 IPR001680 GO:0005515
Dod08g1748 663 Pfam WD domain, G-beta repeat 448 483 IPR001680 GO:0005515
Dod08g1748 663 PRINTS G protein beta WD-40 repeat signature 596 610 IPR020472 -
Dod08g1748 663 PRINTS G protein beta WD-40 repeat signature 512 526 IPR020472 -
Dod08g1748 663 PRINTS G protein beta WD-40 repeat signature 428 442 IPR020472 -
Dod08g1748 663 PANTHER CANNONBALL-RELATED 1 659 - -
Dod08g1748 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 409 441 IPR001680 GO:0005515
Dod08g1748 663 CDD WD40 343 658 - -
Dod08g1748 663 MobiDBLite consensus disorder prediction 238 302 - -
Dod08g1748 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 535 576 IPR001680 GO:0005515
Dod08g1748 663 SMART WD40_4 570 609 IPR001680 GO:0005515
Dod08g1748 663 SMART WD40_4 402 441 IPR001680 GO:0005515
Dod08g1748 663 SMART WD40_4 486 525 IPR001680 GO:0005515
Dod08g1748 663 SMART WD40_4 444 483 IPR001680 GO:0005515
Dod08g1748 663 SMART WD40_4 332 371 IPR001680 GO:0005515
Dod08g1748 663 SMART WD40_4 528 567 IPR001680 GO:0005515
Dod08g1748 663 MobiDBLite consensus disorder prediction 238 282 - -
Dod08g1748 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 577 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1748 Dod-Chr8 41475810 41502628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1748 403 647 Miscellaneous Gene Families AT5G08390 31.325 1.69e-29 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1748 K03130 - gmx:100790500 1035.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1748 08 41475810 41502628 Dod09g1861 09 40218188 40225628 PCT