Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0890 ATGGAAGAGAGCATGTCGATGATGGAGCACGACGATTTCCCCTCTCGGGATGCACCTTCTTCACCTTTGCGATCTCTGAGCGCGCACTTCTCTTCGCTGATGATCAACGTCGGTCACAAACGCAGCATCGTTTCCACCAGAAGGAGCTTTTCCTACAACAGGCTTCCATCCCAACCTTTCAGGTTCTCCGTCCTCAAATTGGACGGATCTTGCTTCCATGTTGAAGTTTCGAAGACGGCAACTGTTGCGGAACTCAAGCAGGCTGTGGAGGCAGTTTTTAGTCACTTGCCTCAGAAAGGGCTAGGGAAAATATCATGGGCACATGTTTGGGGGCAGTTCTGCTTATGCTATGAAGGACAGAAGCTTGTTACTGATACTGATTATCTCAGAGATTGTGGCATCAAGGATGGTGGCCAGCTTCGTTTCATACGCCATGTATCTAACACTTGCAGTTTTCAAAAAAAGAGGATGAAGAAAAGAGTTGTCAGATCGAAACAATACAGGAGGTCATCATCACTGGTGAATAGATATAAACAGAAAGAACATTGTGGAGATGATTTCATTGGTTTGGATGATATAGTCATAGAGAATGGAAAGATCCAGCGTTACAATGAAAAAGAAGATCGTGTTGGCAGGAGCAGATTAACTGGATTTTTGGGAGGTTTGCTCTCGTACACCCGGCTGGCAGTTGTGAGACAAGCTAGAGCTGAAAGCAGGATTTGCGCCTCAACTATTGCCAAAGGCATATCTATCCATCCATCCATCCATCCATCCCACTCCGGCGGCAACAGAATTGGCAAAGCCATGGCGAACATGCTTATGGCTTCGTCCTCCAAATCCCTCATCCGAGTCTCCACCACCGCTTCCCCTCCTCCCCCAACACCCACACCCAGACTCCCCATTCTCCACATGATCTCCGTGCCCAGAATCCCACCCCTGAAACTCGTCTCGCTCCCTAAGCCCCAAATCCTGAAATCCCTCTCCCTCCTCGCTGCCACCTCCCTCGCCCTCGCCCACGCACCTCCCTCTCTCGCCGAGGAAATGGAGAAGGCCGCGCTCTTCGACTTCAACCTCACCCTCCCCATCATCATGGTTGAGTTCCTCCTCCTCATGGTGGCCCTCGACAAGGTCTACTTCACCCCCCTGGGGAAGTTCATGGACGAGAGGGACGCCGCCATCAGGGAGAAGCTGAACAGCGTGAAGGACACCTCTGGGGAGGTGAAGCAGCTGGAGGAGCAGGCCGCCGCCATCATGAAGGCCGCCCGCGCCGAGATATCCGCGGCCCTCAACCAGATGAAGAAGGAGACCCAGGCTGAGGTCGAGCAGAAGATCGCCGAGGGCAGGAAGAAGGTGGAGGCTGAGCTTCAGGAGGCTCTTGCTAGCTTGGAGAGGCAGAAGGAAGACACCATTAAGTCCCTTGACTCCCAGATCACTGCGCTTAGCCAGGACATTGTCAACAAGGTTCTTCCCACTGCTTAG 1479 0.5247 MEESMSMMEHDDFPSRDAPSSPLRSLSAHFSSLMINVGHKRSIVSTRRSFSYNRLPSQPFRFSVLKLDGSCFHVEVSKTATVAELKQAVEAVFSHLPQKGLGKISWAHVWGQFCLCYEGQKLVTDTDYLRDCGIKDGGQLRFIRHVSNTCSFQKKRMKKRVVRSKQYRRSSSLVNRYKQKEHCGDDFIGLDDIVIENGKIQRYNEKEDRVGRSRLTGFLGGLLSYTRLAVVRQARAESRICASTIAKGISIHPSIHPSHSGGNRIGKAMANMLMASSSKSLIRVSTTASPPPPTPTPRLPILHMISVPRIPPLKLVSLPKPQILKSLSLLAATSLALAHAPPSLAEEMEKAALFDFNLTLPIIMVEFLLLMVALDKVYFTPLGKFMDERDAAIREKLNSVKDTSGEVKQLEEQAAAIMKAARAEISAALNQMKKETQAEVEQKIAEGRKKVEAELQEALASLERQKEDTIKSLDSQITALSQDIVNKVLPTA* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0890 492 MobiDBLite consensus disorder prediction 1 20 - -
Dod09g0890 492 CDD Ubl_SNRNP25 60 145 IPR040610 -
Dod09g0890 492 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 7 250 IPR039690 GO:0000398|GO:0005689
Dod09g0890 492 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 345 440 IPR039690 GO:0000398|GO:0005689
Dod09g0890 492 Pfam Ubiquitin-like domain 61 146 IPR040610 -
Dod09g0890 492 Gene3D - 55 153 - -
Dod09g0890 492 CDD ATP-synt_Fo_b 359 489 - -
Dod09g0890 492 Hamap ATP synthase subunit b' [atpF2]. 353 490 IPR034679 GO:0015078|GO:0015986|GO:0045263
Dod09g0890 492 Hamap ATP synthase subunit b [atpF]. 354 491 IPR002146 GO:0015078|GO:0015986|GO:0045263
Dod09g0890 492 Coils Coil 393 472 - -
Dod09g0890 492 Pfam ATP synthase B/B' CF(0) 360 489 IPR002146 GO:0015078|GO:0015986|GO:0045263
Dod09g0890 492 SUPERFAMILY Ubiquitin-like 56 148 IPR029071 -
Dod09g0890 492 MobiDBLite consensus disorder prediction 1 17 - -
Dod09g0890 492 PANTHER UBIQUITIN-LIKE SUPERFAMILY PROTEIN 7 250 - -
Dod09g0890 492 PANTHER UBIQUITIN-LIKE SUPERFAMILY PROTEIN 345 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0890 Dod-Chr9 28585329 28592245 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0890 K02109 - pvu:PHAVU_009G092400g 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g0890 09 28585329 28592245 Dod09g0890 09 28585329 28592245 ECH
Dod08g1691 08 40298244 40302157 Dod09g0890 09 28585329 28592245 PCT