Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0317 ATGGAGTACCAGCGATCTTATAGCAGCTCCTCCTCATCTCACTCTAACCACCTTCAACCAAGGTTAACCTCACAAAGAAGCCTAGCATCAGTTCCTTCCCTTAACCACTCCCAATCATCCCACCACCACCGCCACCACCATCACCCTTCCACAACCACCACCTACCACCACTGCCTCACAACTCTCAAAGGCCACAACACGTCATCCTACACATCCTCCCTCACCCTCAATGGAAAATTCCTCTACGCCGGCTCATCAGACAGGGAAATCAGATCATGGAACCGCACCCCTCTTCACTCCGAATCCGACCAAGAATGTTCACATTCAAGTCCCACCACTAACATGGCTGTAGTTGCTGGAAAAGGTGCTGTGAAGTCCCTAGTAATTCAATCAGACAAGCTTTTCAGTGCTCACCAGGACCACAAAATCCGGGTATGGAAAATCAACAACAGCCATGAACACGATGATCACCATAAGTACACCCGTGTAGCCACCCTCCCTACGCTCGGCGACCGTGCCTCCAAGGTGCTGATCCCCAAGAACCATGTCCAAATTCGGAGGCACAAGAAGTGCACCTGGGTTCACCATGTCGACACAGTCTCAGCATTGGCCTTGTCTAAAGATGGAACCTTGCTGTACTCGGTTTCATGGGACAGGACAATCAAAATCTGGCGAACTAAGGACTTCACATGCTTGGAATCACTCAGCAATGCACATGATGATGCCATCAATGCTGTAGCAGTGTCTCATGATGGCCTTGTTTACAGTGGATCAGCAGATAAGAAGATCAAGGTGTGGAAGAAAGTCCAAGGGGAAAAGAAACACACCCTTGTGGACACCTTAGAGAAACACAATTCTGGGATTAATGCCTTGGCTTTGAGCAGTGATGAGTCTGTGTTGTATTCTGGTGCATGTGATAGATCCATATTAGTTTGGGAGAAGGAAGAAGGGGATGATGATGGTGGCAAAATGGTAGTGGTGGGAGCACTTAGAGGGCACACAAAGTCCATATTGTGCTTGGCTGTGGTGTCTGATTTGGTGTGCAGTGGTTCTGCTGATAAAACAATTCGGATTTGGAAGAAGGGTGTTGATAATAGAGAATATTCTTGTTTAGCTGTTTTAGAAGGGCATACAGGTCCTATTAAGTGCCTAATTGCAGTGGTTAATCATTGTAATTCATCAGAGTCCGAAGCTTCTTTTCTGGTCTATAGTGGCAGCTTGGATTGTGACATTAAGGTGTGGCAGATTTTTGTTCCTGATCTCTAA 1266 0.47 MEYQRSYSSSSSSHSNHLQPRLTSQRSLASVPSLNHSQSSHHHRHHHHPSTTTTYHHCLTTLKGHNTSSYTSSLTLNGKFLYAGSSDREIRSWNRTPLHSESDQECSHSSPTTNMAVVAGKGAVKSLVIQSDKLFSAHQDHKIRVWKINNSHEHDDHHKYTRVATLPTLGDRASKVLIPKNHVQIRRHKKCTWVHHVDTVSALALSKDGTLLYSVSWDRTIKIWRTKDFTCLESLSNAHDDAINAVAVSHDGLVYSGSADKKIKVWKKVQGEKKHTLVDTLEKHNSGINALALSSDESVLYSGACDRSILVWEKEEGDDDGGKMVVVGALRGHTKSILCLAVVSDLVCSGSADKTIRIWKKGVDNREYSCLAVLEGHTGPIKCLIAVVNHCNSSESEASFLVYSGSLDCDIKVWQIFVPDL* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0317 421 Gene3D - 182 418 IPR015943 GO:0005515
Dod09g0317 421 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 7 419 IPR045182 -
Dod09g0317 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 62 94 IPR001680 GO:0005515
Dod09g0317 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 330 360 IPR001680 GO:0005515
Dod09g0317 421 SMART WD40_4 228 267 IPR001680 GO:0005515
Dod09g0317 421 SMART WD40_4 323 360 IPR001680 GO:0005515
Dod09g0317 421 SMART WD40_4 55 94 IPR001680 GO:0005515
Dod09g0317 421 SMART WD40_4 367 415 IPR001680 GO:0005515
Dod09g0317 421 SMART WD40_4 274 313 IPR001680 GO:0005515
Dod09g0317 421 SMART WD40_4 110 147 IPR001680 GO:0005515
Dod09g0317 421 SMART WD40_4 186 225 IPR001680 GO:0005515
Dod09g0317 421 MobiDBLite consensus disorder prediction 1 37 - -
Dod09g0317 421 PRINTS G protein beta WD-40 repeat signature 254 268 IPR020472 -
Dod09g0317 421 PRINTS G protein beta WD-40 repeat signature 402 416 IPR020472 -
Dod09g0317 421 PRINTS G protein beta WD-40 repeat signature 347 361 IPR020472 -
Dod09g0317 421 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 193 224 - -
Dod09g0317 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 193 234 IPR001680 GO:0005515
Dod09g0317 421 CDD WD40 58 415 - -
Dod09g0317 421 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 236 267 - -
Dod09g0317 421 SUPERFAMILY WD40 repeat-like 57 416 IPR036322 GO:0005515
Dod09g0317 421 Pfam WD domain, G-beta repeat 230 267 IPR001680 GO:0005515
Dod09g0317 421 Pfam WD domain, G-beta repeat 194 224 IPR001680 GO:0005515
Dod09g0317 421 Pfam WD domain, G-beta repeat 328 360 IPR001680 GO:0005515
Dod09g0317 421 Pfam WD domain, G-beta repeat 369 414 IPR001680 GO:0005515
Dod09g0317 421 Pfam WD domain, G-beta repeat 58 94 IPR001680 GO:0005515
Dod09g0317 421 Pfam WD domain, G-beta repeat 278 312 IPR001680 GO:0005515
Dod09g0317 421 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 7 419 - -
Dod09g0317 421 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 281 313 - -
Dod09g0317 421 Gene3D - 46 181 IPR015943 GO:0005515
Dod09g0317 421 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 62 94 - -
Dod09g0317 421 MobiDBLite consensus disorder prediction 1 54 - -
Dod09g0317 421 MobiDBLite consensus disorder prediction 38 52 - -
Dod09g0317 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 236 276 IPR001680 GO:0005515
Dod09g0317 421 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 330 360 - -
Dod09g0317 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 281 313 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0317 Dod-Chr9 4861854 4863355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0317 238 415 Acyl Lipid Metabolism Gene Families AT3G18860 25.543 5.37e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0317 - - gmx:100777242 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1659 05 41855071 41856388 Dod09g0317 09 4861854 4863355 PCT