Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0149 ATGAATAATCGATCAAGGAATTTTCCAGCACCCACTTCATGGATTGGAAATTCAGGAACAACTCCACAACCACACCACCCTAACCCCATGAACATGAGCCAGCTAAGGAGCTACACAACCCATCTTATCTCCTCTCAGTCACACCCTCATGCTCAATTTCGTGGTCACTTTCAGCCTTCAGATCCCCTAGCATTGCTGCTTGCTCATCAAGCTCAATATGTACATGCTCAATTAGCCCATTCTCACTCTCATGCTACACAAGCTCAACTCCAAGCTCATCATCAACAAGCACAGTCTATTGCTCAATTGCATAATGCCTATGCAATTGCTAATGCTAATGCCATTGTCAATCCTAATGCTACTGTTGTTCCATCATCTTCATCTGCTGGAAGCTCCAAGAGAGCATCACAAAAGTCACCTTCAAGAAGGAAAAGGGATTTACCCTTACCAGAGATGCAAGTGCAAGAAAAGGTGCCTGAACTTCTTCCTGAGTCTGTTTTCATTACTAAGTTGCTCGATTATGATGCTAAAATTGATGCTGCTTTGGAAAACAAAAAGATCGAGGTACAAGAGTGTATTAGACGCCGTCCCCATGTTCAGAAAACTCTTCGTATTTATGTGTTTAATACCTTCTCAAATCAAGTGGGAGTCCCGTGCACTGGGCCGTGCTTTAGTACTTCCTCAAATCAAAATGATGAGGAAGCTTCTTGGTCCCTTAAGATAACAGGAAGGATATTGGAAGATGGTAATAATAATGATCCTGCAGCAGCTGAAACTTTGCAAACAAACCCGAAGTTCTCTACTTTCTTCAAGAGAGTTTCCATATACTTGGATGAAAGCCTCTACCCTGATGACCATGTGATTGTATGGGACAGTGCTCTTTCCCTTACACAAAATGATGGTTTTGAGGTGAAGAGAAAAGGGGACAAAGAGTTCACTGCAAGGATCAAGATTGAGATGAATTATACACCTGAGAAATTTGTGCTTTCAAAACAATTGAATGAGCTTTTGGGGATGGAGTTTGAGACTCACCCAAGAATAGTAGCTGCTCTTTGGGACTATGTGAATTCTAGGAAGTTACAAAGTCCAAATAACTATTTGTTCTTCACATGTGATCCTCCCCTTCAGAGGGTGTTTGGGGAAGAGCAGATTCATTTCGAAAAGGCTGCTGGAATTTCATGTTATGATGTGCTTGTTGATGTGCCTTTTACACTTGACAAGGATATGTCTTCATTTTTGGCCATGAAAAACACTGAGATTAGCAAAAAGGTTGAAGCTTTTGATGAGCAGATTAGTGCATCATTTAAGAAACTGCATGAGCATCGTAAAAGGAGGGCTTGCTTTCTTAGCTTCAGCCAGTCCCCAGAAGAGTTTGTTAATGCTTTCGCTGCTTCTCAATGTGAAAAAGGGATAAACCATGCTTCTGGAAGTGTCAATCATGAAGCTGAGACGGTTCGGAGTTCTAAATTCTACAATCAACCATG 1484 0.4151 MNNRSRNFPAPTSWIGNSGTTPQPHHPNPMNMSQLRSYTTHLISSQSHPHAQFRGHFQPSDPLALLLAHQAQYVHAQLAHSHSHATQAQLQAHHQQAQSIAQLHNAYAIANANAIVNPNATVVPSSSSAGSSKRASQKSPSRRKRDLPLPEMQVQEKVPELLPESVFITKLLDYDAKIDAALENKKIEVQECIRRRPHVQKTLRIYVFNTFSNQVGVPCTGPCFSTSSNQNDEEASWSLKITGRILEDGNNNDPAAAETLQTNPKFSTFFKRVSIYLDESLYPDDHVIVWDSALSLTQNDGFEVKRKGDKEFTARIKIEMNYTPEKFVLSKQLNELLGMEFETHPRIVAALWDYVNSRKLQSPNNYLFFTCDPPLQRVFGEEQIHFEKAAGISCYDVLVDVPFTLDKDMSSFLAMKNTEISKKVEAFDEQISASFKKLHEHRKRRACFLSFSQSPEEFVNAFAASQCEKGINHASGSVNHEAETVRSSKFYNQP 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0149 494 MobiDBLite consensus disorder prediction 122 152 - -
Dod09g0149 494 CDD SWIB_like 329 386 - -
Dod09g0149 494 MobiDBLite consensus disorder prediction 1 28 - -
Dod09g0149 494 SMART swib_2 323 391 IPR019835 -
Dod09g0149 494 Gene3D SWIB/MDM2 domain 319 392 IPR036885 -
Dod09g0149 494 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 389 494 - -
Dod09g0149 494 ProSiteProfiles SWIB/MDM2 domain profile. 322 404 IPR003121 -
Dod09g0149 494 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 107 387 - -
Dod09g0149 494 Pfam SWIB/MDM2 domain 326 388 IPR003121 -
Dod09g0149 494 MobiDBLite consensus disorder prediction 122 136 - -
Dod09g0149 494 SUPERFAMILY SWIB/MDM2 domain 318 387 IPR036885 -
Dod09g0149 494 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 107 387 - -
Dod09g0149 494 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 389 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0149 Dod-Chr9 2163013 2164577 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Dod09g0149 SWIB 2.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0149 K11650 - zju:107404542 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1500 05 39905849 39909201 Dod09g0149 09 2163013 2164577 PCT