Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1500 ATGAACAACAACAATAATCCAGCGAAGAACATTGCTGCACCACCGTCGTTTTTCGGAAATTCCGGCACTGCCCCTCATTCCACCACCACCACCACCAATACCTCACAACCCCACCTTCTGTCACAGTCACAGCCACCTCAAACACAAGGTGGTTCTCACTTCCCTGGTCACTTTCAGCTCTCACAGCCCCAAACCCAGTTGCTGGTGCCCAATGCACAATCACATTTTCCTCAGCCACAGCCTCAACAACCACAACAACAACAACAGCACCAGCAACAACAGCAGAAACAACAACCTCAGAATCAGCCCGCTAACCAATCTCCCGGCACAAATGCTAGTAGTGCCGCGGCCACTCCTGCCGCCACTTCAGCCAAGAGGGCCGCCTCTAGGCCGCCTTCTAGGCCGGCCGGTTCATCAAATTCTAACCAGTCAGCCTTCAAGACTATGGAATTGACCCCTGCTCCTCTAAGGAGGAAGAGGAGCTTGCCGGAAAAGGAGAAGAGGATACCGGATAGGGTGGCCGCGGCTCTGCCTGAGTCTGCTATTTACACTCATTTGCTTGAGCTTGAGGCTCAAGTTGACGCTACTTTGGCTAGGAAGAAGATTGATATACAGGAGGCCGTGAGAAGCCCTCAATGTGTTCAGAAGACTCTACGCGTTTATGTATATAATACCTTTTCGAATCAGAATAGAATGGATTCTGAGAAGAAAGTTGGGGAGGAGCCCTCTTGGTCCCTCAGGATAACTGGAAGGATATTAGAGGATGGCAAGGATCCTGTGGCAGCCGGGATTTCGCAGGGGTCGAACCCTTTGTATCCAAAGTTTTCGGCTTTCTTCAAGAAAATTACCATATACTTGGATCAGGGGTTCTATCCTGCTAATCATGTCATTGTGTGGGATTCGGCTCGTTCACCTGCCCAGCAGGATGGTTTTGAGGTGAAGAGGAAAGGAGACAGGGAATTCACTGTGGTGATCAGACTAACAATGAATTCTACGCCCGAGAAGTTTATGGTTTCAACACAACTGTCTAAAGTTTTAGGGATTGAGTTTGATACTCGCCCGAGAATAATAGCTGCTCTTTGGCACTATGTGAAGTGTAGGAAGCTACAGAGCCCCAATGACCCTTCATTCTTCATGTGTGATCCTTCTCTCCAAAGGGTGTTTGGCGAAGAGAAAATGAAATTCTCCGTGGCTTCGCAGAAGATATCACAGCATTTGTCACAACCGCAGCCTATACACGTGGAGCATAAAATCAAGCTTTCTGGAAATTGTCCAGCTGGAACTACATGTTACGATGTGCAGGTTGATGTGCCTCTTCCACTGGAGAAGGATATGTCTGCATTCTTGGCGAGCATTGAGAGGCACAAAGAGATTGATGCTTTGGATGAAGTGATTTGCAATTCCATAAAGAAGATCCAAGAGCATCGCAGGAGACGAGCTTTCTTTCTCGGCTTTAGTCAGTCTCCAGCAGAGTTTATTAATGCTTTGATTGCTTCTCAGAGCAAGGATCTAAAGCTTGTTGCTGGAGATGCCAGCCATGATGCAGACAAGGAACGACGTTTTGAATTCTACAAACAACCATGGGTTGAGGATGCTGTTATTCGCTACCTAAACCGGAAAACTGCTCGAAGTGATGCTCCTGGAAGCACGTAA 1653 0.4791 MNNNNNPAKNIAAPPSFFGNSGTAPHSTTTTTNTSQPHLLSQSQPPQTQGGSHFPGHFQLSQPQTQLLVPNAQSHFPQPQPQQPQQQQQHQQQQQKQQPQNQPANQSPGTNASSAAATPAATSAKRAASRPPSRPAGSSNSNQSAFKTMELTPAPLRRKRSLPEKEKRIPDRVAAALPESAIYTHLLELEAQVDATLARKKIDIQEAVRSPQCVQKTLRVYVYNTFSNQNRMDSEKKVGEEPSWSLRITGRILEDGKDPVAAGISQGSNPLYPKFSAFFKKITIYLDQGFYPANHVIVWDSARSPAQQDGFEVKRKGDREFTVVIRLTMNSTPEKFMVSTQLSKVLGIEFDTRPRIIAALWHYVKCRKLQSPNDPSFFMCDPSLQRVFGEEKMKFSVASQKISQHLSQPQPIHVEHKIKLSGNCPAGTTCYDVQVDVPLPLEKDMSAFLASIERHKEIDALDEVICNSIKKIQEHRRRRAFFLGFSQSPAEFINALIASQSKDLKLVAGDASHDADKERRFEFYKQPWVEDAVIRYLNRKTARSDAPGST* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1500 550 MobiDBLite consensus disorder prediction 1 120 - -
Dod05g1500 550 CDD SWIB_like 338 406 - -
Dod05g1500 550 Pfam SWIB/MDM2 domain 335 406 IPR003121 -
Dod05g1500 550 MobiDBLite consensus disorder prediction 153 167 - -
Dod05g1500 550 Gene3D SWIB/MDM2 domain 328 414 IPR036885 -
Dod05g1500 550 ProSiteProfiles SWIB/MDM2 domain profile. 331 408 IPR003121 -
Dod05g1500 550 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 107 547 - -
Dod05g1500 550 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 107 547 - -
Dod05g1500 550 SUPERFAMILY SWIB/MDM2 domain 326 416 IPR036885 -
Dod05g1500 550 MobiDBLite consensus disorder prediction 1 167 - -
Dod05g1500 550 SMART swib_2 332 411 IPR019835 -
Dod05g1500 550 MobiDBLite consensus disorder prediction 133 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1500 Dod-Chr5 39905849 39909201 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Dod05g1500 SWIB 6.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1500 K11650 - gmx:100790947 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1500 05 39905849 39909201 Dod05g1500 05 39905849 39909201 ECH
Dod05g1500 05 39905849 39909201 Dod09g0149 09 2163013 2164577 PCT