Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0082 ATGGAGCAGAACGGCGAGGAGAACGGCGGCACGACCACCATCTCGGAACAGGAGGAGGCATTGGTGGCTCTGATCGAACACCGCACCCGCGAAGTCAAAAACCTCCGTCACCGTATCACCTATTACAAATCCCAGCTTGAGGAAGCAGAAAAAAGGTTGCAAGATTCTGAATTAAAATTGGCTCGCCTTCGGGGTCAAACTAATGCTGTGTTGTCTAGAAGTTCCATAGATGATGGACTTAAAACTGTGAAGACAGAGCGTAGATCAAACAGTCCCACTGATAGAAATGAAAGTTCTTCCAAAAACCAGCCTCAATCTAAACCAGAACTTGTTATTCCTTCCGTGAATCCAAAAACTTCTCAATCTCCATCATTGCCAAGATCTTCTGCAAAAGCTCCTATAACTTCCAGTTCTGAAGCTAGTCCATCAGCACACACTTCAGCAACCACTGGTTCCAGTTCTAGACTTAAATCTGAAAAGTCTCAAAGACTATCTTCTGAGAAGCAAAGTACTGAAATCAAGGACAAGGGAACAAAAAGGAAGTTTGAACAGAAAGAACACATGGAATTGATTCCTTTAATACGTAGGAGTTCTAAACCAAGCTTGGTACACTGTCAAACAAGCAATCACATCTCAAGTCAACACAAGAGGAAACTGCGGAGTCTTGCTTATTGTCCTGTAAATGATCAGCTTTTTGTGACCAGTGCTTTGGATGGAGTGGTCAACTTGTGGCAAGTTCAGTCTAAGGGATCAGGAGCCTCTATGCTTAGCTCCTCTGATTGTGTATCCCCAAAGCAGAGGAGATGGGCAGAAGATATAACCTGGCACCCAGATGGAAACAGCCTATTTGCTGTATACAGCGCTGATGGCGGAGACTCTCAAGTATCAGTTGTGAATCTGAATAAAGGTCAAGGGGGAGAGCGTGTAAAATTCTTAGAGGACAAGCCTCATGTGAAGGGTATTATCAACGGCATTGTTTTTATGCCCTGGGAAAATACATGTTTTGTGACTGGCGGAAGTGACCATGCTGTTATACTTTGGAGTGAGCAGGATGGTGGGAACAAATGGAAGCCAAAAGCACTGCACAGGAACCTACATTCTTCTGCTGTCATGGGTGTTGCTGGTATGCAGCAAAAGCAGATCGTGTTGTCTGTTGGTGCAGACAAGAGAATTTTTGGGTTTGATGTTCGTGTAGGTAGAGCAGATTTCAGGCATCAGATTGACAGCAAATGCTTGAGTGTCCTGCCCAATCCATCCGACTTCAATTTATTTATGGTTCAAACAGCGACTCATGAGAAGCAGCTTCGGTTGTTTGATATTAGATTGAGGCAGACAGAATTACATGCTTTTGGATGGAAGCAAGAAAGCAGTGAATCTCAATCAGCTCTGATAAATCAGGCTTGGTCTCCTGATGGACTTTATATAACATCTGGTTCAGCTGATCCTGTGATTCACATTTTTGATATTAGGTATAACTCTCACAAGCCTTCCCAATCTATAAGAGCTCATCAGAAACGGGTCTTCAAAGCCATTTGGCTTCAGTCTGTTCCTCTTCTAGTATCCATATCATCTGACCTCAACATTGGACTGCACAAGGTTTCCTAA 1605 0.4361 MEQNGEENGGTTTISEQEEALVALIEHRTREVKNLRHRITYYKSQLEEAEKRLQDSELKLARLRGQTNAVLSRSSIDDGLKTVKTERRSNSPTDRNESSSKNQPQSKPELVIPSVNPKTSQSPSLPRSSAKAPITSSSEASPSAHTSATTGSSSRLKSEKSQRLSSEKQSTEIKDKGTKRKFEQKEHMELIPLIRRSSKPSLVHCQTSNHISSQHKRKLRSLAYCPVNDQLFVTSALDGVVNLWQVQSKGSGASMLSSSDCVSPKQRRWAEDITWHPDGNSLFAVYSADGGDSQVSVVNLNKGQGGERVKFLEDKPHVKGIINGIVFMPWENTCFVTGGSDHAVILWSEQDGGNKWKPKALHRNLHSSAVMGVAGMQQKQIVLSVGADKRIFGFDVRVGRADFRHQIDSKCLSVLPNPSDFNLFMVQTATHEKQLRLFDIRLRQTELHAFGWKQESSESQSALINQAWSPDGLYITSGSADPVIHIFDIRYNSHKPSQSIRAHQKRVFKAIWLQSVPLLVSISSDLNIGLHKVS* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0082 534 SUPERFAMILY WD40 repeat-like 217 531 IPR036322 GO:0005515
Dod09g0082 534 MobiDBLite consensus disorder prediction 70 181 - -
Dod09g0082 534 MobiDBLite consensus disorder prediction 160 181 - -
Dod09g0082 534 SMART WD40_4 451 488 IPR001680 GO:0005515
Dod09g0082 534 SMART WD40_4 258 299 IPR001680 GO:0005515
Dod09g0082 534 SMART WD40_4 305 348 IPR001680 GO:0005515
Dod09g0082 534 SMART WD40_4 199 245 IPR001680 GO:0005515
Dod09g0082 534 SMART WD40_4 493 532 IPR001680 GO:0005515
Dod09g0082 534 SMART WD40_4 355 395 IPR001680 GO:0005515
Dod09g0082 534 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 6 533 - -
Dod09g0082 534 Gene3D - 415 534 IPR015943 GO:0005515
Dod09g0082 534 ProSiteProfiles Trp-Asp (WD) repeats profile. 212 248 IPR001680 GO:0005515
Dod09g0082 534 Gene3D - 71 414 IPR015943 GO:0005515
Dod09g0082 534 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 6 533 - -
Dod09g0082 534 Pfam WD domain, G-beta repeat 465 488 IPR001680 GO:0005515
Dod09g0082 534 MobiDBLite consensus disorder prediction 79 94 - -
Dod09g0082 534 Coils Coil 32 66 - -
Dod09g0082 534 MobiDBLite consensus disorder prediction 95 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0082 Dod-Chr9 1123390 1129319 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0082 - - gmx:100799587 866.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g0082 09 1123390 1129319 Dod09g0082 09 1123390 1129319 ECH
Dod04g2637 04 50231386 50236059 Dod09g0082 09 1123390 1129319 PCT