Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0080 ATGGGAAACTGCTGCTCCGACGTCGCCGGCGGCCGCTCCGCCATCGGCGGCACCTCCGCCGATGTCCGCAATCCCGCCGACTCCCCCAACGACGCCGTCGACAACTTCCTCCGCTCACGCGGCTACCAAGGCCTCTTCTTTCAGATCGAGTTATCGTTCTCCGCTTCGGGATTGCGTGATCGCGATGTGCTCTCCAAGAGTGACCCGATGTTGGTTCTTTATGCAAAAGGAAAAAATGGAGCACTTGAGGAACTTGGCCGCACGGAAGTAGTACTGAATTCATTGAATCCCACGTGGATTACTAAACACACCCTCATTTATCATTTTGAGGTTGTTCAGGTTTTAGTGTTTCGTGTGTATGATGTTGATACTCAGTTTCACAATGTAGATGTAAAGGTGCTTAAGCTAGAAGAGCAGCAATTTCTTGGTGAGGCGAGCTGTGCATTATCTGAGATAATTACAAGATTTGATCGATCTTTGACATTAGACCTACGCGGAGAAGATTCTGTCAGATCTACCCACTCCCGAAATTGTGGGAAGCTCTTGGTTCGTGCTGAAGAATGTGTTAACTCAAAGACTACAATAGAGATGATATTCAGATGTTCTGATTTGGATTATAGAGATCTCTTCTCAAGAAGTGATCCCTTTTTACTGATATCAAAAGTCATGGAAGGTAGTATTCAAATTCCCATTTGCAAAACAGAAGTTATAAAGAATGATCTCAACCCAATGTGGAAGCCAGTGTTCTTGAATATTCAACAAGTAGGAGGCAAGGAGAGTCCTTTGGTCATAGAGTGCTATAACTTTAATAGCAACGGCAAACATGATTTGATGGGAAAAGTGCAGAAATCTTTAGTGGAGTTGGAGAAGTGTCATTCTAATGGCCAAGGAGAAAAATTACTTCTGCCTAAAAAGGTGTTAAAGAGTCAGCTATTTGTGGACAAATTTGCTGAAAGTGTCCAATTTAGTTTCCTGGATTACTTGGCTGGGGGTTTTGAGTTGAACTTCATGGTGGCCATTGACTTTACAGCTTCAAATGGAAATCCACGCCTTCCAGATTCATTGCATTATCTTGATCCTTCAGGGAGGCCAAATGCATACCAGAGGGCAATCATTGAGGTTGGGGAGGTAATACAGTTTTATGATTCAGACAAGCGATTTCCTGCTTGGGGATTTGGAGCACGACCAATTGATGGTCCAGTCTCCCATTGCTTCAACTTGAATGGAAGCAGTCATTACTGTGAGGTGGAAGGGATCCAAGGAATCATGATGGCATACACAAGTGCCCTGCTTAACGTATCTCTTGCAGGACCAACACTTTTTGGACCTGTCATAAGTAATGCTGCACTGATTGCCAGCCAATCTGTAGCAAATGGTGGAAGAAAGTACTTTGTTTTGTTAATAATCACAGATGGAGTGGTGACAGATCTCCAAGAAACAAAAGATGCTCTTGTTAAAGCCTCTGATCTGCCATTATCAATCCTTATTGTTGGAGTAGGAGGAGCTGATTTCAAAGAAATGGAGGTTTTGGATGCAGACAAGGGAGAGAGACTTGAAAGTTCATCTGGACGTGTTGCTTCCCGTGATATAGTCCAATTTGTTCCATTCAGGGATGTTCAAAGCAGAGAGATTTCAGTAGTTCAAGCACTCGTAGCAGAATTACCAACTCAATTTTTAACTTACATGCGAAGTAGAAACATCCAACCGAGCCCCTAG 1716 0.4365 MGNCCSDVAGGRSAIGGTSADVRNPADSPNDAVDNFLRSRGYQGLFFQIELSFSASGLRDRDVLSKSDPMLVLYAKGKNGALEELGRTEVVLNSLNPTWITKHTLIYHFEVVQVLVFRVYDVDTQFHNVDVKVLKLEEQQFLGEASCALSEIITRFDRSLTLDLRGEDSVRSTHSRNCGKLLVRAEECVNSKTTIEMIFRCSDLDYRDLFSRSDPFLLISKVMEGSIQIPICKTEVIKNDLNPMWKPVFLNIQQVGGKESPLVIECYNFNSNGKHDLMGKVQKSLVELEKCHSNGQGEKLLLPKKVLKSQLFVDKFAESVQFSFLDYLAGGFELNFMVAIDFTASNGNPRLPDSLHYLDPSGRPNAYQRAIIEVGEVIQFYDSDKRFPAWGFGARPIDGPVSHCFNLNGSSHYCEVEGIQGIMMAYTSALLNVSLAGPTLFGPVISNAALIASQSVANGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEVLDADKGERLESSSGRVASRDIVQFVPFRDVQSREISVVQALVAELPTQFLTYMRSRNIQPSP* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0080 571 CDD C2A_Copine 48 172 - -
Dod09g0080 571 CDD C2B_Copine 195 291 IPR037768 -
Dod09g0080 571 ProSiteProfiles C2 domain profile. 28 162 IPR000008 -
Dod09g0080 571 SMART C2_3c 46 161 IPR000008 -
Dod09g0080 571 SMART C2_3c 193 297 IPR000008 -
Dod09g0080 571 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 50 169 IPR035892 -
Dod09g0080 571 CDD vWA_copine_like 309 558 IPR010734 -
Dod09g0080 571 Pfam Copine 354 569 IPR010734 -
Dod09g0080 571 Gene3D C2 domain 193 310 IPR035892 -
Dod09g0080 571 PANTHER COPINE 1 570 IPR045052 GO:0005544
Dod09g0080 571 SUPERFAMILY vWA-like 334 516 IPR036465 -
Dod09g0080 571 ProSiteProfiles C2 domain profile. 177 301 IPR000008 -
Dod09g0080 571 Pfam C2 domain 54 153 IPR000008 -
Dod09g0080 571 Pfam C2 domain 198 289 IPR000008 -
Dod09g0080 571 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 1 570 - -
Dod09g0080 571 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 197 290 IPR035892 -
Dod09g0080 571 Gene3D C2 domain 52 192 IPR035892 -
Dod09g0080 571 SMART VWA_4 333 530 IPR002035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0080 Dod-Chr9 1103283 1110737 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0080 - - gmx:100807801 1007.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g0080 09 1103283 1110737 Dod09g0080 09 1103283 1110737 ECH
Dod04g2636 04 50213965 50220115 Dod09g0080 09 1103283 1110737 PCT