Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2636 ATGGGTAACTGCTTCTCCGACGTGGCCGGCGGCCGTGCGGCCATCGGCACCACAGCCGGCGGTCTCATGAACCCCGCCGACGCTACCCAGGACGCCGTCGGCAACTTCCTCAGGTCTCGCGGCTACCACGGCCTCTTCTCTCAGATCGAGTTGTCGTTTTCTGCTTCCAGCTTGCGTGACCGGGATGTGCTCTCCAAGAGTGATCCAATGATGGTTCTTTATGCAAGAGGAAAAAATGGAGCACTCGAGGAACTTGTCCGTACAGAAGTGGTTCTGAATTCATTGGATCCTAAGTGGATTACTAAACACATACTCATTTATCATTTTGAGGTTGTTCAGGTTTTAGTGTTTCGAGTGTACGATGTTGATTCTCAGTTTCACCATGTTGATGTAAAGATGCTTAAGCTAGAAGAGCAACAATTTCTAGGCGAGGCGACCTGTCCATTATCTGAGATAATTACAAAGTCTGATCGATCATTGACATTAGAGCTACACAGAGAAGATTCTATCAGATCTACCCACTCCCAAAACTATGGGAAGCTCTTGGTGCATGCTGAGGAATGTGTTAACTCAAAGACTACAGTTGAGATGATCTTCAGGTGTTCAGATTTGGAAAATAAGGATCTCTTCTCAAGAAGTGATCCCTTTTTAGTGATATCAAAAGTTGTGGAAGGTGGTGCCCATATTCCAATTTGCAAGACAGAAGTTCTAAAGAATGATCTCAACCCAACATGGAAGCCAGTGTTTTTGAATATTCAACAAGTAGGAGGCAAGGACAATCCTTTGATAATAGAGTGCTATAACTTTAATAGCAATGGCAAACATGATTTTATGGGAAAAGTGCAAAAATCTTTGACAGAGTTGGAGCTGCTTCAGTCTAGCGGCCAAGGAGAGAATTTGTTTTTGCCCACAGCCGTTGGTCATAATTCTCATAACAAGGTATTAAAGAGCCAGCTATTTCTGGACAAATTTACTGAAAGTATCCAATACACTTTCCTCGATTATTTGTCTGGGGGATTTGAATTGAACTTCATGGTGGCCATTGATTTTACAGCTTCAAATGGAAATCCACGGCTTCCAGATTCTTTGCATTATATTGATCCTTCAGGACGGCCAAATGCATACCAGAGGGCAATTGTTGAGGTTGGGGAGGTGTTACAGTTTTATGATTCAGACAAGCGATTTCCTACGTGGGGATTTGGAGCACGACCGATTGATGGCCCTGTCTCCCATTGTTTCAACTTGAATGGAAGCAGTCATTACTGTGAGGTGGAAGGAATCCAAGGAATTATGATGGCATACACAAGTGCCCTGCTTAATGTTTCTCTTGCCGGACCGACTCTTTTTGGACCTGTCATAAGCAATGCTGCATTTATTGCCAGCCAATCTGGAGCAAATGGTGGAAGAAAGTACTTTGTTTTGTTAATAATCACAGATGGAGTAGTGACAGACCTCCAAGAAACAAAAGATGCCCTTGTTAAAGCATCTGATCTACCATTATCAATCCTTATTGTTGGTGTGGGAGGAGCTGATTTTAAAGAAATGGAGGTTTTAGATGCAGACAAGGGAGAGAGGCTTGAAAGTTCAACTGGACGCGTTGCTTCACGTGATATAGTCCAGTTTATTCCATTCCGAGATGTTCAAAGTGGAGAAATTTCAGTAGTTCAAGCACTTCTAGCAGAATTACCTAGTCAATTTTTAACTTATATGCGGAGCAGGAATATCCAACCGATCTAG 1737 0.4312 MGNCFSDVAGGRAAIGTTAGGLMNPADATQDAVGNFLRSRGYHGLFSQIELSFSASSLRDRDVLSKSDPMMVLYARGKNGALEELVRTEVVLNSLDPKWITKHILIYHFEVVQVLVFRVYDVDSQFHHVDVKMLKLEEQQFLGEATCPLSEIITKSDRSLTLELHREDSIRSTHSQNYGKLLVHAEECVNSKTTVEMIFRCSDLENKDLFSRSDPFLVISKVVEGGAHIPICKTEVLKNDLNPTWKPVFLNIQQVGGKDNPLIIECYNFNSNGKHDFMGKVQKSLTELELLQSSGQGENLFLPTAVGHNSHNKVLKSQLFLDKFTESIQYTFLDYLSGGFELNFMVAIDFTASNGNPRLPDSLHYIDPSGRPNAYQRAIVEVGEVLQFYDSDKRFPTWGFGARPIDGPVSHCFNLNGSSHYCEVEGIQGIMMAYTSALLNVSLAGPTLFGPVISNAAFIASQSGANGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEVLDADKGERLESSTGRVASRDIVQFIPFRDVQSGEISVVQALLAELPSQFLTYMRSRNIQPI* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2636 578 Pfam Copine 362 577 IPR010734 -
Dod04g2636 578 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 51 169 IPR035892 -
Dod04g2636 578 Gene3D C2 domain 52 194 IPR035892 -
Dod04g2636 578 CDD vWA_copine_like 312 566 IPR010734 -
Dod04g2636 578 Gene3D C2 domain 195 322 IPR035892 -
Dod04g2636 578 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 197 290 IPR035892 -
Dod04g2636 578 ProSiteProfiles C2 domain profile. 28 162 IPR000008 -
Dod04g2636 578 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 1 577 - -
Dod04g2636 578 CDD C2A_Copine 47 164 - -
Dod04g2636 578 CDD C2B_Copine 195 288 IPR037768 -
Dod04g2636 578 ProSiteProfiles C2 domain profile. 177 300 IPR000008 -
Dod04g2636 578 PANTHER COPINE 1 577 IPR045052 GO:0005544
Dod04g2636 578 SUPERFAMILY vWA-like 342 524 IPR036465 -
Dod04g2636 578 SMART C2_3c 52 161 IPR000008 -
Dod04g2636 578 SMART C2_3c 198 297 IPR000008 -
Dod04g2636 578 Pfam C2 domain 54 158 IPR000008 -
Dod04g2636 578 Pfam C2 domain 198 293 IPR000008 -
Dod04g2636 578 ProSiteProfiles VWFA domain profile. 343 562 IPR002035 -
Dod04g2636 578 SMART VWA_4 341 538 IPR002035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2636 Dod-Chr4 50213965 50220115 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2636 - - gmx:100807801 997.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2636 04 50213965 50220115 Dod09g0080 09 1103283 1110737 PCT