Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0040 ATGGCCGAGAAAGCACCAAAGACAACAACACAAGAGGAGGCAGTGTTGCGTGCGGAGGAAGTTGTGGTCACTGATGTTGCACCTGCTGACAAAAAACAAGACACCGCCACTGAGGTTTCCAAAACCAGCAGTGCTGTTGTTGGTGATGATGAGAAGGTGCCTGAATCAGGTTCATTCAAGGAAGAGAGCACAAGGGTCTCTGACCTTTCTGACAACGAGAAGAAGGCACTCCAAGACCTCAAAACACTTGTCCAGAATGCACTCAACAATCACGAGTTCTCTGCTCCTGCTACTTCTCCTCCAGCACCCAAAGAGGAGAAGCCAGAGGCACCTGCTGCAGCTGTAGAAGCTGGTGAAGAAGATAAGAACAAGGAAGAAGAAGGTAAGCCCGTTAAGGAGGAGGAGGAGAAGCAGAAGAACTCAGAACCAGTTGAAGAAGAAGCTGAACAAGAGCAAGAGCAACCAACAAAACAAGAAGAAGCTGCAGCACCAGCAGCAGACGAAGTGAAAGAAACCGAGGTGGTGGCTGTAGAGAAAGCAGCAACAGTAGATGATGATGGAGCAAAAACCGTTGAGGCCATTGAAGAGACCGTTGTGGCTGTCTCTTCAACTGAACCTGATCAAGCTGCTCCTAAGGAGGAACCAAAACAAGCCAAAGAAGAAAAAGAAGAAGAAAAGGAAACAAAACAAGAACAACAACAACAACAACAATCTTCTTCAGCACCAAAGCAATTGCTGCCACCCGAAGAGGTTTCCATTTGGGGAGTGCCACTCCTCGTAGATGACAGAAGCGACGTGATCCTCTTGAAGTTCCTTCGGGCAAGGGACTTCAAGGTGAAGGAAGCATTCACCATGATCAAGAACACAATCAGGTGGAGGAAGGAGTTCAGGATCGAGGAGTTGATGAATGAGGATTTTGGTGGTGATGATCTGGAGAAGGCTGTGTACATGCATGGCTATGACAAGGAAGGGCACCCTGTGTGTTACAACATATATGGTGAGTTCCAGAACAAGGAGCTCTACAAGAAGACTTTCTCTGATGAGGAGAAGAGGTTGAGGTTCCTCAGGTGGAGGGTTCAGTTCCTTGAGAGGAGCATCAGGAAGCTGGATTTCACACCTGGTGGAATCTCCACCATTGTTCAGGTCAATGATCTCAAGAATTCTCCTGGACCTGCCAAGTGGGAACTTAGACAAGCTACCAAACAGGCCCTTCAGTTGCTTCAGGACAATTATCCTGAATTTGTTGCCAAACAGGTGTTTATCAATGTGCCGTGGTGGTACCTGGCAGTGAACAGGATGATAAGCCCTTTCCTTACACAAAGAACCAAAAGCAAGTTTGTCTTTGCTGGTCCATCCAAATCAGCTGAGACCCTTTTGAGATACATTGCTCCGGAGCAACTTCCGGTTAAGTATGGTGGGCTAAGCAAAGATGGTGAATCCGGAATTACCGATGCTGTTACTGAAATTACAGTGAGGCCAGCTGCTCAACACACCGTGGAGTTTCCCGTTACTGAGAATTGCCTACTCTCTTGGGAGCTCAGAGTAATAGGGTGGGATGTAAGCTATAGTGCAGAGTTTGTGCCAAGCTCAGAAGGAAGCTACACAGTAATCATTCAGAAGGCCAGAAAGGTTGCTTCATCAGAAGAGCCAGTGCTTTGTAACAGTTACAAAATTGGTGAACCTGGGAAAGTGGTTTTCACAATTGACAATCCAAGCTCTAAGAAGAAGAAGCTCTTGTACCGCTTGAAGACCAAGCCTTCCTCCACTGACTGA 1773 0.4715 MAEKAPKTTTQEEAVLRAEEVVVTDVAPADKKQDTATEVSKTSSAVVGDDEKVPESGSFKEESTRVSDLSDNEKKALQDLKTLVQNALNNHEFSAPATSPPAPKEEKPEAPAAAVEAGEEDKNKEEEGKPVKEEEEKQKNSEPVEEEAEQEQEQPTKQEEAAAPAADEVKETEVVAVEKAATVDDDGAKTVEAIEETVVAVSSTEPDQAAPKEEPKQAKEEKEEEKETKQEQQQQQQSSSAPKQLLPPEEVSIWGVPLLVDDRSDVILLKFLRARDFKVKEAFTMIKNTIRWRKEFRIEELMNEDFGGDDLEKAVYMHGYDKEGHPVCYNIYGEFQNKELYKKTFSDEEKRLRFLRWRVQFLERSIRKLDFTPGGISTIVQVNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSAETLLRYIAPEQLPVKYGGLSKDGESGITDAVTEITVRPAAQHTVEFPVTENCLLSWELRVIGWDVSYSAEFVPSSEGSYTVIIQKARKVASSEEPVLCNSYKIGEPGKVVFTIDNPSSKKKKLLYRLKTKPSSTD* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0040 590 MobiDBLite consensus disorder prediction 199 246 - -
Dod09g0040 590 SUPERFAMILY CRAL/TRIO N-terminal domain 208 305 IPR036273 -
Dod09g0040 590 MobiDBLite consensus disorder prediction 163 181 - -
Dod09g0040 590 SMART CRAL_TRIO_N_2 264 289 IPR011074 -
Dod09g0040 590 Gene3D - 211 295 - -
Dod09g0040 590 ProSiteProfiles GOLD domain profile. 479 584 IPR009038 -
Dod09g0040 590 PANTHER PATELLIN-1 21 590 IPR044834 GO:0008289
Dod09g0040 590 MobiDBLite consensus disorder prediction 109 156 - -
Dod09g0040 590 CDD SEC14 310 474 IPR001251 -
Dod09g0040 590 Pfam CRAL/TRIO domain 313 473 IPR001251 -
Dod09g0040 590 SMART sec14_4 309 476 IPR001251 -
Dod09g0040 590 Gene3D - 310 488 IPR036865 -
Dod09g0040 590 Pfam CRAL/TRIO, N-terminal domain 241 288 IPR011074 -
Dod09g0040 590 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 485 584 IPR036598 -
Dod09g0040 590 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 317 479 IPR001251 -
Dod09g0040 590 MobiDBLite consensus disorder prediction 53 78 - -
Dod09g0040 590 MobiDBLite consensus disorder prediction 209 231 - -
Dod09g0040 590 Gene3D GOLD domain 489 584 - -
Dod09g0040 590 Coils Coil 70 90 - -
Dod09g0040 590 PANTHER PATELLIN-3 PROTEIN 21 590 - -
Dod09g0040 590 SUPERFAMILY CRAL/TRIO domain 315 476 IPR036865 -
Dod09g0040 590 Coils Coil 212 239 - -
Dod09g0040 590 MobiDBLite consensus disorder prediction 25 181 - -
Dod09g0040 590 MobiDBLite consensus disorder prediction 82 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0040 Dod-Chr9 672502 675986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0040 268 468 Acyl Lipid Metabolism Gene Families AT5G47730 27.488 1.70e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0040 - - gmx:100786707 698.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g0040 09 672502 675986 Dod09g0040 09 672502 675986 ECH
Dod04g2603 04 49953165 49956709 Dod09g0040 09 672502 675986 PCT