Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2603 ATGGCTGAGGAGGCTCCAAAGGCTCAAGAGGCGGTGGTGCAAGTGGAGGAGGTGGTGGTGACTGCTGTTCCACCTCCTGACAAAACCACAGCTGCTGTTCCTGCTGCTGACAAAGATCCACAGCCCGAGGAGCCAGTGGAAGAGGAGGTGGAGAAGAAGAAGAAGAAGCCTGTTGAAGAGACCGTGACTCTTGGGACTCATCTTTCCAAATCATCAAACAACGATGAAAAGGTCCCTGAATCGGGTAACTTCAAGGAAGAAAGCACAAAACTCTCTGATCTTCCTGAGAATGAGAACAAGGCACTCCACGAGCTGAAGCAGCTTATTCAGGAAGCACTCAACAAGCACGAGTTCTCTGCCCCTGTTAACCCACCCAAGGAAGAAGAGAAGCCAGGAAATGCAGCTGCTGAAAAAGAAGATGAAAACAAACAACCCCTGAAGGAGGTGGAACAAGGAGCCGCTGAGACTGGTACTGATGCTGCAGCAACAGCAGAACCCGCACAGCCCACAAAAACAGAGGAGGAGGTTGCAACAAAAACAGAGGAAGAAGAAAAGAAGGAAGAAGAAGTGAAAGAAGCCACGGTGGTTAGAGTTGAAGTTGAAGACAAGGTAGTTGCTGCTCCATCTGTAGATGACGACGGAGCAAAAACCGTGGAGGCCATTGAAGAGACCGTTGTTGCTGTCTCTTCCTCTGTTCCAACAACAGAGCATCCACCTGCAGAGAGAGTTTCTGCGCAAGCAGAAGAAGCAGCCAAGGAGGAAAAGACCAAGGACCAAGAAGCTTCTTCGCCATTGCCACCCGAACAAGTATCCATTTGGGGGATACCGCTGCTCGCAGACGAGAGGAGTGACGTGATCCTCTTGAAGTTCCTTCGCGCCAGGGAATTCAAGGTGAAAGAAGCTTTCGCCATGATCAAGAGCACAATTCGGTGGAGGAAAGAGTTCGGAATCGAGGAGTTGTTGGAGGAGAATTTCGGTGACGAGTTGGAGAAGGTGGTGTGCATGCATGGATCCGATAAAGAAGGGCACCCTGTGTGTTACAATATATATGGTGAGTTCCAGAACAAGGAGCTCTACAAGAAGGCATTCTCTGATGAGGAGAAGAGGCAGAGGTTCCTGAGATGGAGAATTCAGTTCCTTGAGAAGAGTATCAGGAAATTGGACTTCTTCCCTGGTGGAATTTCCACCATTGTTCAGGTCAATGATCTCAAGAACTCACCTGGACCTGCCAAGTGGGAGCTTAGACAAGCCACCAAACAGGCCCTTCAGCTGCTTCAGGACAATTACCCTGAATTTGTAGCCAAACAGGTGTTCATCAATGTGCCATGGTGGTACCTTGCTGTGAATAGGATGATAAGCCCTTTCCTTACTCAGAGAACCAAAAGCAAGTTCGTGTTTGCCGGGCCTTCCAAATCGGCAGAGACCCTTTTGAGATACATTGCTCCGGAGCAACTTCCGGTGAAGTATGGCGGACTAAGCAAAGATGGGGAGTTCGGAAATTCGGATGCTGTTACCGAAATCACGGTGAGGCCAGCAACAAAACATACCGTGGAATTCCCTGTTACTGAGAAATGCTTACTTTCATGGGAGCTCAGAGTTATAGGGTGGGAAGTACGCTATGGTGCAGAATTTGTGCCAAGCGCAGAAGCAGGCTATACAGTAATCATCCAGAAGGCTAGAAAGTTTGCTATATCAGAAGAACCAGTGCTTTGCAACAGCTTCAAAATCGGTGAGCCTGGCAAAGTTGTTCTCACCATTGACAATGCAAGCTCCAAGAAGAAGAAGCTCTTGTACCGCTTGAAGACCAAGCCTTCCCCCTCTGACTGA 1827 0.4893 MAEEAPKAQEAVVQVEEVVVTAVPPPDKTTAAVPAADKDPQPEEPVEEEVEKKKKKPVEETVTLGTHLSKSSNNDEKVPESGNFKEESTKLSDLPENENKALHELKQLIQEALNKHEFSAPVNPPKEEEKPGNAAAEKEDENKQPLKEVEQGAAETGTDAAATAEPAQPTKTEEEVATKTEEEEKKEEEVKEATVVRVEVEDKVVAAPSVDDDGAKTVEAIEETVVAVSSSVPTTEHPPAERVSAQAEEAAKEEKTKDQEASSPLPPEQVSIWGIPLLADERSDVILLKFLRAREFKVKEAFAMIKSTIRWRKEFGIEELLEENFGDELEKVVCMHGSDKEGHPVCYNIYGEFQNKELYKKAFSDEEKRQRFLRWRIQFLEKSIRKLDFFPGGISTIVQVNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSAETLLRYIAPEQLPVKYGGLSKDGEFGNSDAVTEITVRPATKHTVEFPVTEKCLLSWELRVIGWEVRYGAEFVPSAEAGYTVIIQKARKFAISEEPVLCNSFKIGEPGKVVLTIDNASSKKKKLLYRLKTKPSPSD* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2603 608 ProSiteProfiles GOLD domain profile. 501 602 IPR009038 -
Dod04g2603 608 MobiDBLite consensus disorder prediction 172 193 - -
Dod04g2603 608 MobiDBLite consensus disorder prediction 242 261 - -
Dod04g2603 608 PANTHER PATELLIN-3 PROTEIN 5 608 - -
Dod04g2603 608 SUPERFAMILY CRAL/TRIO N-terminal domain 90 324 IPR036273 -
Dod04g2603 608 MobiDBLite consensus disorder prediction 130 148 - -
Dod04g2603 608 SUPERFAMILY CRAL/TRIO domain 332 494 IPR036865 -
Dod04g2603 608 SMART CRAL_TRIO_N_2 283 308 IPR011074 -
Dod04g2603 608 MobiDBLite consensus disorder prediction 21 193 - -
Dod04g2603 608 Gene3D - 240 314 - -
Dod04g2603 608 MobiDBLite consensus disorder prediction 64 78 - -
Dod04g2603 608 Gene3D - 327 507 IPR036865 -
Dod04g2603 608 SMART sec14_4 326 494 IPR001251 -
Dod04g2603 608 MobiDBLite consensus disorder prediction 228 267 - -
Dod04g2603 608 Pfam CRAL/TRIO domain 331 491 IPR001251 -
Dod04g2603 608 PANTHER PATELLIN-1 5 608 IPR044834 GO:0008289
Dod04g2603 608 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 502 601 IPR036598 -
Dod04g2603 608 MobiDBLite consensus disorder prediction 79 111 - -
Dod04g2603 608 MobiDBLite consensus disorder prediction 45 61 - -
Dod04g2603 608 Gene3D GOLD domain 508 602 - -
Dod04g2603 608 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 322 497 IPR001251 -
Dod04g2603 608 Pfam CRAL/TRIO, N-terminal domain 271 306 IPR011074 -
Dod04g2603 608 CDD SEC14 328 492 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2603 Dod-Chr4 49953165 49956709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2603 287 486 Acyl Lipid Metabolism Gene Families AT1G55840 26.852 2.01e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2603 - - gmx:100788197 734.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2603 04 49953165 49956709 Dod04g2603 04 49953165 49956709 ECH
Dod04g2603 04 49953165 49956709 Dod09g0040 09 672502 675986 PCT