Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1685 ATGTCTCAAGTCTTCGGCTTTTCCGGTGATAATTTTTGCCGTGGGGGGTCTGTATATGGCTGTGCCAACCCCAAGGAAGCAAGTTTCTTCCTGCCTGTTGGCCATCAAGTTGATGTTTACTTTCCTCCTAGGAAGAGATCACGTGTCAGTGCTCCATTTGTTTTCAGTGGAGAATGGTTTGAAAAGAAGCAGGAGACATCTATTGAATCTTTGCCAGATGAATGTCTCTTTGAGATCCTCAGAAGGTTGCCTGTAGGCAAAGATAGGAGTGCAAGTGCTTGTGTTTCCAAGCGCTGGCTTATGTGTTTAAGCAATATTTGTAAGAATGAAATCTGCAGCAACAAAAATACTGTACCAAAGAGTGATCTTAATGATCAAGACGGTGTTGATGAGGAATTTGGAGGTGAGGGATACCTCTCCCGAAGCTTGGAAGGAAAGAAGGCAACAGATGTTAGACTTGCGGCCATTGCTGTTGGAACTGCGGCACGGGGAGGATTGGGGAAGCTTTCAATCCGTGGAAGCAACTCAGATCATGTCGTCACTAATCGGGGTCTGAAAGCGGTTGCTCATGGTTGCCCTTCTTTAAAGTCTCTCTCTCTATGGAATATTGCTACTATTGGTGACGAAGGCCTGATCGAGATTGCGAGGGGATGCCAAAATCTTGAGAAGCTTGACCTTTGCAAGTGCCCAGCAGTATCTGACCAGGCTTTAATTGCAGTTGCTAAGAACTGCCCAAGTCTGACAGAATTATCATTGGAGTCATGTCCTAACATTGGTAACGAAGGTCTACAAGCTATTGGGAAATGCTGCTCCAATCTAAAGTCCATAGCTATCAAGGACTGTGCTGGTGTTGGTGATCAGGGAGTTGCAGGTCTGTTTTCTTCAACTTCTTCGGTTCTGACAAAGGTGAAACTACAGGCACTGACTGTGTCTGACCTCTCTCTAGCTGTTATTGGACATTATGGCAAGGCAGTTACTGATCTTGTCCTCAATTGCCTCCCAAATTTCAGTGAGAGGGGGTTCTGGGTTATGGGTAATGGTAACGGATTGCAGAAACTAAAGTCCCTAACAATTGCATCCTGCCGAGGACTAACAGATGTTGGGCTTGAAGCTGTTGGAAAGGGATGTTCAAATCTGAAAACCATCCACCTTCGTAAGTGTGCATTTTTGTCAGACAAGGGGCTGGTATCATTCGCAGAGGCTTCTTCATCACTTGAGAGCTTACAATTGGAGGAGTGCCACAGAATTTCCCAATTGGGGTTTTTTGGTGTCCTTTTTAATTGTGGTGCCAAATTGAAGGCTATTTCTCTGATAAGCTGCTATGGGATCAAAGATCTAAATTTGGTATTGTCACCATCATCATCCTGTGACTCACTTAGGTCACTATCGATTTGTAAGTGCCCTGGATTTGGGAGTGGTACCCTTTCTGTACTGGGAAAGCTGTGTCCTCAGCTTCAGCATGTTGAATTTAGTGGACTTGAGGGAGTGACAGATGCTGGGTTTCTTTCATTGCTCGAGAGCAATGAGGCTGGTCTGGTTAAAGTTAATCTCAGTGGTTGCATAAATCTGACTGACAAGGTTGTTTCGACCTTGGCCAATCTGCATGGTTGGACTCTTGAGATTCTAAACCTTGATGGTTGTAAGAACATCAGTGATGCCAGCTTGATGGCAATTGCCGATAATTGCCCATTGCTATGTGATCTTGATGTTTCCAAGTGTGCAATCACTGATGCTGGGATTGCGGCCCTGGCAGAAGCAAAGCAGTTCAATCTACAGATTCTTTCTTTGTCAGGCTGCACTTTGGTTTCAGATAGGAGCTTGCCAGCTTTGAGAAAATTGGGCAGCACCCTTTTGGGACTAAATATCCAGCATTGCAATGCAATCAGCAGTGGTGCGGTTGATACGCTTGTGGAACTACTCTGGAGGTGTGACATCCTCTCTTGA 1944 0.4522 MSQVFGFSGDNFCRGGSVYGCANPKEASFFLPVGHQVDVYFPPRKRSRVSAPFVFSGEWFEKKQETSIESLPDECLFEILRRLPVGKDRSASACVSKRWLMCLSNICKNEICSNKNTVPKSDLNDQDGVDEEFGGEGYLSRSLEGKKATDVRLAAIAVGTAARGGLGKLSIRGSNSDHVVTNRGLKAVAHGCPSLKSLSLWNIATIGDEGLIEIARGCQNLEKLDLCKCPAVSDQALIAVAKNCPSLTELSLESCPNIGNEGLQAIGKCCSNLKSIAIKDCAGVGDQGVAGLFSSTSSVLTKVKLQALTVSDLSLAVIGHYGKAVTDLVLNCLPNFSERGFWVMGNGNGLQKLKSLTIASCRGLTDVGLEAVGKGCSNLKTIHLRKCAFLSDKGLVSFAEASSSLESLQLEECHRISQLGFFGVLFNCGAKLKAISLISCYGIKDLNLVLSPSSSCDSLRSLSICKCPGFGSGTLSVLGKLCPQLQHVEFSGLEGVTDAGFLSLLESNEAGLVKVNLSGCINLTDKVVSTLANLHGWTLEILNLDGCKNISDASLMAIADNCPLLCDLDVSKCAITDAGIAALAEAKQFNLQILSLSGCTLVSDRSLPALRKLGSTLLGLNIQHCNAISSGAVDTLVELLWRCDILS* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1685 647 Pfam F-box domain 69 107 IPR001810 GO:0005515
Dod08g1685 647 PANTHER EIN3-BINDING F-BOX-LIKE PROTEIN 17 637 - -
Dod08g1685 647 SMART LRR_CC_2 509 534 IPR006553 -
Dod08g1685 647 SMART LRR_CC_2 244 269 IPR006553 -
Dod08g1685 647 SMART LRR_CC_2 456 481 IPR006553 -
Dod08g1685 647 SMART LRR_CC_2 218 243 IPR006553 -
Dod08g1685 647 SMART LRR_CC_2 562 586 IPR006553 -
Dod08g1685 647 SMART LRR_CC_2 376 401 IPR006553 -
Dod08g1685 647 SMART LRR_CC_2 482 507 IPR006553 -
Dod08g1685 647 SMART LRR_CC_2 588 613 IPR006553 -
Dod08g1685 647 SMART LRR_CC_2 270 295 IPR006553 -
Dod08g1685 647 SMART LRR_CC_2 402 427 IPR006553 -
Dod08g1685 647 SMART LRR_CC_2 536 561 IPR006553 -
Dod08g1685 647 SMART LRR_CC_2 350 375 IPR006553 -
Dod08g1685 647 SMART LRR_CC_2 192 217 IPR006553 -
Dod08g1685 647 Gene3D Ribonuclease Inhibitor 256 447 IPR032675 -
Dod08g1685 647 SUPERFAMILY RNI-like 319 643 - -
Dod08g1685 647 Pfam Leucine Rich repeat 567 584 IPR001611 GO:0005515
Dod08g1685 647 Pfam Leucine Rich repeat 376 399 IPR001611 GO:0005515
Dod08g1685 647 Pfam Leucine Rich repeat 538 559 IPR001611 GO:0005515
Dod08g1685 647 Pfam Leucine Rich repeat 243 266 IPR001611 GO:0005515
Dod08g1685 647 Pfam Leucine Rich repeat 351 372 IPR001611 GO:0005515
Dod08g1685 647 Gene3D Ribonuclease Inhibitor 152 243 IPR032675 -
Dod08g1685 647 Gene3D - 61 112 - -
Dod08g1685 647 PANTHER UNCHARACTERIZED 17 637 - -
Dod08g1685 647 SUPERFAMILY RNI-like 187 297 - -
Dod08g1685 647 Gene3D Ribonuclease Inhibitor 448 647 IPR032675 -
Dod08g1685 647 SMART fbox_2 71 112 IPR001810 GO:0005515
Dod08g1685 647 SUPERFAMILY F-box domain 66 104 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1685 Dod-Chr8 39898006 39901959 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1685 K14515 - gmx:100820247 1048.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1685 08 39898006 39901959 Dod08g1685 08 39898006 39901959 ECH
Dod08g1685 08 39898006 39901959 Dod09g0908 09 28814070 28815425 PCT