Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1235 ATGGCATCCTCTATTGCAGTTGTTTTTGGTCTATTTCTAGCAAGCAACATGGTCCTCCCCACACTGGCGACTGTCCACACCGTCGGAGAAACATCAGGTTGGGTAATAGGTGGTGATTACGGTACATGGACTAGTGGCAAGACCTTTGCGGTCGGTGATACTCTTGTTTTCAACTATGGAGCTGGTCACACCGTGGATGAAGTTAAAGCAAGAGATTACAAAAGCTGCACCACGGACAATTCACTGAGCACAGACAGCAGTGGTGCCACCACAATTACCCTCAAGACTGCTGGGACTCACTACTTTATATGTGCTGTTCCAGGGCATTGTGGGGTAGGCATGAAGCTTGCTGTTACTGTGAAGGCAGCAAAAGCCACAGCTCCTGCTCCTGCTCCAGCACCATCATCACGGAAAAAGTCACCTTCTGATGATGACACCAAGGCCAAGCCTAGTGCCACCACCACCAATCCAACCGCTAGTACTGCCACTGCTCCAACTACCAGCATTACCACCACCCCAATCTCACAAACCAAACCCAATAAATCAAAACCAAACAGTTCAATGGCTTCCAGTCACTCACCGATTGTTGCTATGCTGATTGTTTCTTGGATCTCCTACTATGTATTGAGTATGGTATGA 639 0.482 MASSIAVVFGLFLASNMVLPTLATVHTVGETSGWVIGGDYGTWTSGKTFAVGDTLVFNYGAGHTVDEVKARDYKSCTTDNSLSTDSSGATTITLKTAGTHYFICAVPGHCGVGMKLAVTVKAAKATAPAPAPAPSSRKKSPSDDDTKAKPSATTTNPTASTATAPTTSITTTPISQTKPNKSKPNSSMASSHSPIVAMLIVSWISYYVLSMV* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1235 212 Coils Coil 211 212 - -
Dod08g1235 212 Pfam Plastocyanin-like domain 38 114 IPR003245 GO:0009055
Dod08g1235 212 PANTHER BLUE COPPER PROTEIN 4 140 IPR039391 GO:0009055
Dod08g1235 212 MobiDBLite consensus disorder prediction 126 190 - -
Dod08g1235 212 Gene3D - 22 127 IPR008972 -
Dod08g1235 212 ProSiteProfiles Phytocyanin domain profile. 24 122 IPR003245 GO:0009055
Dod08g1235 212 CDD Phytocyanin 24 120 - -
Dod08g1235 212 MobiDBLite consensus disorder prediction 147 190 - -
Dod08g1235 212 PANTHER BLUE COPPER PROTEIN-LIKE 4 140 - -
Dod08g1235 212 ProSitePatterns Type-1 copper (blue) proteins signature. 98 114 IPR028871 -
Dod08g1235 212 SUPERFAMILY Cupredoxins 23 120 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1235 Dod-Chr8 16928482 16931546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1235 17 120 Miscellaneous Gene Families AT1G22480 59.615 3.13e-36 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1235 - - gmx:100305666 213.386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1235 08 16928482 16931546 Dod08g1235 08 16928482 16931546 ECH
Dod08g1235 08 16928482 16931546 Dod09g1265 09 33755403 33756497 PCT