Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0815 ATGGCTGATGATACTCCACAAGATATTGCCAACAGGGAGAAAATCTTCAAGAACTTTGATGCCAATGGTGATGGCCAAATCTCTTCATCAGAGCTTGGGGAAGCACTGAAAACTCTGGGGTCGGTGACCACAGAAGAGGTTCAAGGGATTATGGAAGAGATTGACACTGATGGGGATGGTTTCATTTCATATGAGGAGTTCACAGAATTCGCAAGAGCCAACCGTGGCCTGGTCAAAGATGTTGCCAAGATATTTTAA 258 0.4457 MADDTPQDIANREKIFKNFDANGDGQISSSELGEALKTLGSVTTEEVQGIMEEIDTDGDGFISYEEFTEFARANRGLVKDVAKIF* 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0815 85 SUPERFAMILY EF-hand 10 71 IPR011992 -
Dod08g0815 85 ProSitePatterns EF-hand calcium-binding domain. 55 67 IPR018247 -
Dod08g0815 85 CDD EFh 13 72 IPR002048 GO:0005509
Dod08g0815 85 Pfam EF-hand domain pair 15 72 IPR002048 GO:0005509
Dod08g0815 85 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Dod08g0815 85 ProSiteProfiles EF-hand calcium-binding domain profile. 45 77 IPR002048 GO:0005509
Dod08g0815 85 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
Dod08g0815 85 PANTHER POLCALCIN NIC T 1 1 85 - -
Dod08g0815 85 Gene3D - 2 85 - -
Dod08g0815 85 SMART efh_1 11 39 IPR002048 GO:0005509
Dod08g0815 85 SMART efh_1 46 74 IPR002048 GO:0005509
Dod08g0815 85 PANTHER TROPONIN 1 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0815 Dod-Chr8 9719826 9720083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0815 1 85 EF-hand Containing Proteins AT3G03430 67.059 1.25e-36 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0815 K13448 - sspl:121788808 144.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0234 04 2902365 2902619 Dod08g0815 08 9719826 9720083 PCT