Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0234 ATGGCTGATGATCCACAAGATGTTGCTGACAGGGAGAAGATTTTCAAGCGTTTTGATGCCAATGGTGATGGCCAAATCTCTGCATCAGAGCTTGGTGAGGCACTTAAGACACTTGGATCAGTGACCCCAGATGAAGTGCAATCGATGATGGCCGAGATTGACACAGATGGTGATGGCTTCATTTCATATGAGGAATTCACAGAATTTGCAAGAGCCAACCGTGGCCTAGTGAAGGATGTTGCCAAGATCTTTTAA 255 0.4549 MADDPQDVADREKIFKRFDANGDGQISASELGEALKTLGSVTPDEVQSMMAEIDTDGDGFISYEEFTEFARANRGLVKDVAKIF* 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0234 84 Pfam EF-hand domain pair 14 71 IPR002048 GO:0005509
Dod04g0234 84 PANTHER POLCALCIN NIC T 1 1 84 - -
Dod04g0234 84 ProSitePatterns EF-hand calcium-binding domain. 54 66 IPR018247 -
Dod04g0234 84 ProSiteProfiles EF-hand calcium-binding domain profile. 6 41 IPR002048 GO:0005509
Dod04g0234 84 PANTHER TROPONIN 1 84 - -
Dod04g0234 84 ProSitePatterns EF-hand calcium-binding domain. 19 31 IPR018247 -
Dod04g0234 84 Gene3D - 2 84 - -
Dod04g0234 84 CDD EFh 12 71 IPR002048 GO:0005509
Dod04g0234 84 SUPERFAMILY EF-hand 9 70 IPR011992 -
Dod04g0234 84 ProSiteProfiles EF-hand calcium-binding domain profile. 44 76 IPR002048 GO:0005509
Dod04g0234 84 SMART efh_1 45 73 IPR002048 GO:0005509
Dod04g0234 84 SMART efh_1 10 38 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0234 Dod-Chr4 2902365 2902619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0234 4 84 EF-hand Containing Proteins AT5G17480 74.074 8.45e-39 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0234 K13448 - csv:101214153 152.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0234 04 2902365 2902619 Dod08g0815 08 9719826 9720083 PCT