Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0681 ATGGATACTGATCTGTGGGCCAAAGTTCTTAACCCTGAAAATGACTACAGAAGGCAACTTATCGATCAAGTTGTATCTACGGCTTTGCCTGAAAGCAAGAGCCCTGAACAAGTTTCTGCAGCTGTTAAAGCTTTCATGACAGCTGATCTTCCCCATGAATTGATTGAACTTCTTGAGAAGATTGTGCTTCAGAATTCTGCATTCAGCGGGAACTTTAATTTGCAGAATCTTCTTATTTTGACAGCAATAAAGGCTGATCCATCCAGAGTAATGGATTATGTTAATAGACTGGATAATTTTGATGGACCTGCAGTTGGAGAAATGGCTGTTGAAGCTCAGTTATATGAGGAAGCATTTGCTATTTTCAAGAAGTTTAACTTGAATGTTCAAGCAGTCAATGTTTTGCTAGATAATATTCACAGCATTGATAGGGCTGTGGAGTTTGCATTCAGAGTTGAAGAAGATGCTGTTTGGAGTCAGGTGGCCAAGGCTCAACTGAGGGAGGGGCTAGTAAGTGACGCAATTGAGTCATTTATACGAGCAGATGATGCTACGCAATTTTTGGATGTTATCCGTGCTGCTGAAGATGCCAATGTTTACCACGACTTGGTGAAATACTTACTGATGGTTAGGCAGAAGGCAAAAGAACCCAAGGTTGACAGCGAGCTCATTTATGCATATGCAAAGATTGATAGGCTAAGTGACATTGAGGAGTTCATTCTTATGCCAAATGTTGCTAATCTTCAAAATGTTGGTGATCGGTTGTTTGATGAAGAATTGTATGAAGCTGCCAAAATCATATTTGCTTTTATATCTAACTGGGCCAAGTTGGCTATCACATTAGTCAAGTTAAAGCAGTTCCAAGGTGCTGTTGATGCGGCAAGGAAAGCGAACAGCTCAAAAACATGGAAGGAAGTTTGCTTTGCTTGTGTTGATGCAGAGGAATTTCGTTTGGCCCAGATATGTGGGCTCAACATTATTGTTCAGGTGGATGACTTAGAAGAGGTAGTGAATATTACCAAAACAGAGGTTGCTTCAACGAGCTAA 1047 0.4059 MDTDLWAKVLNPENDYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEMAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIHSIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDANVYHDLVKYLLMVRQKAKEPKVDSELIYAYAKIDRLSDIEEFILMPNVANLQNVGDRLFDEELYEAAKIIFAFISNWAKLAITLVKLKQFQGAVDAARKANSSKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVVNITKTEVASTS* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0681 348 SUPERFAMILY ARM repeat 89 231 IPR016024 -
Dod08g0681 348 Pfam Region in Clathrin and VPS 29 167 IPR000547 GO:0006886|GO:0016192
Dod08g0681 348 Pfam Region in Clathrin and VPS 182 317 IPR000547 GO:0006886|GO:0016192
Dod08g0681 348 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 178 319 IPR000547 GO:0006886|GO:0016192
Dod08g0681 348 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 29 174 IPR000547 GO:0006886|GO:0016192
Dod08g0681 348 SUPERFAMILY ARM repeat 2 102 IPR016024 -
Dod08g0681 348 PANTHER CLATHRIN HEAVY CHAIN 1-RELATED 1 338 - -
Dod08g0681 348 PANTHER CLATHRIN HEAVY CHAIN RELATED 1 338 - -
Dod08g0681 348 SMART CLH_2 178 319 IPR000547 GO:0006886|GO:0016192
Dod08g0681 348 SMART CLH_2 29 174 IPR000547 GO:0006886|GO:0016192
Dod08g0681 348 Gene3D Tetratricopeptide repeat domain 93 232 IPR011990 GO:0005515
Dod08g0681 348 Gene3D Tetratricopeptide repeat domain 233 344 IPR011990 GO:0005515
Dod08g0681 348 Gene3D Tetratricopeptide repeat domain 2 92 IPR011990 GO:0005515
Dod08g0681 348 SUPERFAMILY ARM repeat 232 339 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0681 Dod-Chr8 7933426 7934752 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0681 K04646 - gmx:100802224 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0366 04 4867589 4874943 Dod08g0681 08 7933426 7934752 PCT