Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0366 ATGGCTACCGCAAACGCTCCGGTCGCCATGAGAGAAGCACTAACTTTGCCGAGCATTGGCATAAGTCCGCAGTTCATCACGTTCACGCACGTGACGATGGAGTCCGATAAGTACATTTGCGTTCGCGAAACGGCTCCGCAGAACAGTGTGGTCATCATTGATATGAACATGCCGATGCAGCCTTTGAGGAGGCCTATCACTGCAGATTCGGCTCTCATGAATCCGAATTCTAGGATCCTTGCTTTGAAAGCTCAACTACAAGGAACGACTCAAGATCACCTACAAATATTCAATATTGAGATGAAAGCAAAGATGAAATCTTATCAGATGCCTGAGCAGCAGGTAGTTTTTTGGAAGTGGATAACCCCCAAGTTGTTGGGTCTGGTGACACAGAGCTCTGTATACCATTGGTCAATAGAAGGTGACTCTGAACCTGTGAAGATGTTTGAGAGAACAGCAAATTTGGCAAATAATCAGATAATTAATTATCGATGTGACCCTACAGAAAAATGGTTGGTCTTGATTGGTATTGCTCCCGGTACCCCTGAGAGGCCACAGTTGGTTAAAGGGAACATGCAACTTTTCTCGGTGGATCAACAGCGCAGTCAGGCTCTTGAAGCACATGCTGCATCATTTGCTCAATTTAAAGTTCCTGGGAATGAAAATCCTTCTGTTTTGATTTCCTTTGCCACAAAGACACTTAATGCTGGTCAAATTATATCCAAGTTGCATGTCATTGAGCTGGGTGCACAGCCAGGAAAGCCGTCATTTACAAAGAAACAAGCAGATCTTTTCTTTCCCCCAGATTTTGCCGATGACTTTCCAGTTGCCATGCAGATATCCCACAAATACAGTTTGATTTATGTGATTACAAAACTTGGTCTCCTATTTGTCTATGATTTGGAGACAGCTACTGCAGTATATCGGAACAGAATTAGTCCAGATCCTATATTTTTGACGTCAGAAGCTACATCAGTGGGGGGCTTTTATGCCATTAACAGGAGAGGCCAGGTGTTATTGGCTACTGTTAATGAACAGACCATTGTGAATTTTGTCAGCGGTCAATTAAACAATTTGGAGCTAGCGGTTAATCTCGCCAAGAGAGGAAATCTTCCTGGTGCTGAGAAGCTGGTAGTGGAACGTTTCCATGAACTCTTTGCCCAAACAAAGTACAAAGAAGCAGCTGAGCTTGCTGCTGAGTCTCCACAAGGAATCCTTCGTACTCCTGATACAGTTGCCAAATTTCAGAGTGTTCCTGTGCAAGCTGGGCAAACTCCTCCACTTTTGCAGTACTTTGGAACACTGCTAACGAGAGGAAAGCTGAATGCCTTTGAGTCATTAGAACTGTCACGGCTGGTTGTGAACCAGAACAAGAAAAATCTTTTGGAGAATTGGTTGGCAGAGGACAAGCTTGAATGCAGTGAAGAACTAGGAGATCTTGTAAAGGTTGGGTACACGCCTGACTACCTCTTCCTTTTGCAAACGATTCTCCGGACAGATCCTCAGGGTGCTGTTAACTTTGCACTAATGATGTCCCAAATGGAGGGAGGCTGCCCGGTTGATTACAACACCATAACTGATCTGTTTCTTCAGAGGAACCTGATCCGGGAGGCAACTGCCTTTCTCCTTGATGTTTTGAAGCCAAATCTTCCAGAACATGGGTACCTTCAAACAAAGGTGTTGGAGATAAATCTGGTAACCTTCCCCAATGTCGCTGATGCAATTTTGGCTAATGGCATTGAGGATCCCGACATTCACTTCAAGTACATTGAAGCAGCGGCAAAGACTGGACAAATCAAAGAGGTCGAGCGTGTGACTAGAGAATCAAGTTTCTATGATCCTGAGAAAACGAAGAACTTTCTAATGGAAGCTAAGCTTCCAGATGCACGACCTCTGATTAATGTTTGTGACCGTTTTGGATTTGTTCCCGATCTAACACACTATCTATACACCAACAACATGCTTCGCTACATTGAAGGCTATGTTCAAAAGGTGAACCCGGGGAATGCTCCGTTAGTTGTTGGCCAGCTGCTCGATGATGAGTGCCCAGAAGATTTTATCAAGGGCCTGATTCTTTCTGTTCGTTCATTACTGCCAGTAGAGCCCCTCGTGGAGGAATGTGAGAAGAGGTGGGTACCTATTCTCTAA 2148 0.4455 MATANAPVAMREALTLPSIGISPQFITFTHVTMESDKYICVRETAPQNSVVIIDMNMPMQPLRRPITADSALMNPNSRILALKAQLQGTTQDHLQIFNIEMKAKMKSYQMPEQQVVFWKWITPKLLGLVTQSSVYHWSIEGDSEPVKMFERTANLANNQIINYRCDPTEKWLVLIGIAPGTPERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKTLNAGQIISKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYSLIYVITKLGLLFVYDLETATAVYRNRISPDPIFLTSEATSVGGFYAINRRGQVLLATVNEQTIVNFVSGQLNNLELAVNLAKRGNLPGAEKLVVERFHELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGYLQTKVLEINLVTFPNVADAILANGIEDPDIHFKYIEAAAKTGQIKEVERVTRESSFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRWVPIL* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0366 715 Gene3D - 1 378 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Dod04g0366 715 Pfam Clathrin, heavy-chain linker 345 368 IPR015348 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Dod04g0366 715 PANTHER CLATHRIN HEAVY CHAIN 1 482 - -
Dod04g0366 715 PANTHER CLATHRIN HEAVY CHAIN 581 710 - -
Dod04g0366 715 PANTHER CLATHRIN HEAVY CHAIN RELATED 482 580 - -
Dod04g0366 715 PANTHER CLATHRIN HEAVY CHAIN RELATED 1 482 - -
Dod04g0366 715 PANTHER CLATHRIN HEAVY CHAIN RELATED 581 710 - -
Dod04g0366 715 SMART CLH_2 513 686 IPR000547 GO:0006886|GO:0016192
Dod04g0366 715 SUPERFAMILY ARM repeat 458 637 IPR016024 -
Dod04g0366 715 Pfam Region in Clathrin and VPS 580 684 IPR000547 GO:0006886|GO:0016192
Dod04g0366 715 SUPERFAMILY ARM repeat 346 482 IPR016024 -
Dod04g0366 715 Pfam Clathrin-H-link 370 435 - -
Dod04g0366 715 SUPERFAMILY Clathrin heavy-chain terminal domain 5 344 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Dod04g0366 715 Pfam Clathrin propeller repeat 155 198 IPR022365 -
Dod04g0366 715 Pfam Clathrin propeller repeat 20 56 IPR022365 -
Dod04g0366 715 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 513 686 IPR000547 GO:0006886|GO:0016192
Dod04g0366 715 PANTHER CLATHRIN HEAVY CHAIN 482 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0366 Dod-Chr4 4867589 4874943 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0366 K04646 - gmx:547986 1102.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0366 04 4867589 4874943 Dod08g0681 08 7933426 7934752 PCT