Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0207 ATGGATATTTCGGACTGCACAAGGATTGTCTTTGATAAAATTCAGAAATTCGAGCCCGAAAATGCCACAAAGATCATTGGATATCTCCTCTTGCAAGACCATGGTGAGCAAGAAATGGCTCAATTGGCTTCATGCCCTGACCATGTCATTCGTGAAGTGGTATTTAATGCCAAAAATGGTCTCCAAAGATTGGCTTCTAAACCAACCGTGCTTCCAAATCCGATTTCACCTCCTGTGGCTGTCAACCCTCAACAAGTTTTAAGCCCTTTACGAGTAATCTCCCCAGGAACTCCAACAACAAATTTCATGGTTCCCTCTCTCTATTGGGATTCACAGTCTGTTACCAATGCCAATCCAGAATTCATGGCTATGAATTACCTGGATTCTATCACAGAACTGCAGAAGCAGGCTCAGTTGTTAGGTTTGGAGAATCATATAGATCCTATAAATACAGGAACTGCTGGAATTGCCAATGATTTCTATGGTTTTGATGTTTCTGCACCTAATTTGGGTGGAAAAGCTGGTAGAAGGTTTTCAGGCCTATCCGAATTTCCTGTTAAGACCTGTCACTATTTCAACAAAGGATACTGTAAGCATGGAGCTAGCTGTAGATACTATCATGGACAAGTTGTCCCTGAGAGCATTCCTCAGATGCATAAAAATGATTCTGCTAATGAGGATCAGGTGGTTTCGCCAGGGTCACTAGCACAGTTAGAGGCTGAGATTGTTGAGCTCCTAAAACCAAGAAAAGGCAATCCAATTTCGATTGCTGCCCTGCCAATGGCATATTATGATAAATATAAGAAGGTACTGCAGGCTGATGGTTACTTAACTGAGAGCCAGAGACATGGTAAGTCTGGCTATAGTTTGACAAAGCTTCTGGCACGACTGAAAAATAGTATTCACATAATAGACAGGCCTCATGGGCAGCATGAAGTGGTTCTGATAGAAGATGCTCCAAAACACACACACAAGGGAGATTTTGTTCAAAATATTAGTGCATCGCGACAAATATATTTGACATTTCCTGCTGACAGCACTTTCACTGAGGAGGATGTCTCAGACTACTTCAGCACATTTGGGTGTGTTGAAGATGTAAGGATTCCATGCCAGCAGAGAAGGATGTTTGGATTTGTGACATTTGTTGATCCGGAAACCGTTAAAACGATATTGGACAAAGGAAATCCCCATTATGTTCGCGGTTCTCGGGTGCTTGTCAAACCATACCGGGAGAAAGCGAAGGTTATTGAAAGGAAGTATGTAGATAGAATTGAGCTCCCTGGGTTTTACTCACAACACTTTTTAGACATGGATTCTGAAATTGCCTCAATTCCAAGAAGTTGTGCGAACCCCAGATTTCTAAGGAGACAGCTGATTGAAGAACAGGAGCAGGCCCTGGAACTTCAGAGGAGACGTCTGGCGGAGCTGCAGTTTTCCCAAAAACCTTTGTCCACTTCACCTTCTCCCTATTTTGGCTTCCCCATGGGTGGTGGATTAAGAGTTTCAGAAGATCATTTCAATTTCGAGCCTGAAGGATGTTTCAGTTATGTGCTGAAAGACAAACCTAGGCCTATAGACCCCAATTGCTCTGATGAGAACAGCAGCCAAGGACTCGATCTTCCGGACAGTCCATTTGCATTTCCAACAGAAAGCAGGAATTAG 1662 0.4302 MDISDCTRIVFDKIQKFEPENATKIIGYLLLQDHGEQEMAQLASCPDHVIREVVFNAKNGLQRLASKPTVLPNPISPPVAVNPQQVLSPLRVISPGTPTTNFMVPSLYWDSQSVTNANPEFMAMNYLDSITELQKQAQLLGLENHIDPINTGTAGIANDFYGFDVSAPNLGGKAGRRFSGLSEFPVKTCHYFNKGYCKHGASCRYYHGQVVPESIPQMHKNDSANEDQVVSPGSLAQLEAEIVELLKPRKGNPISIAALPMAYYDKYKKVLQADGYLTESQRHGKSGYSLTKLLARLKNSIHIIDRPHGQHEVVLIEDAPKHTHKGDFVQNISASRQIYLTFPADSTFTEEDVSDYFSTFGCVEDVRIPCQQRRMFGFVTFVDPETVKTILDKGNPHYVRGSRVLVKPYREKAKVIERKYVDRIELPGFYSQHFLDMDSEIASIPRSCANPRFLRRQLIEEQEQALELQRRRLAELQFSQKPLSTSPSPYFGFPMGGGLRVSEDHFNFEPEGCFSYVLKDKPRPIDPNCSDENSSQGLDLPDSPFAFPTESRN* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0207 553 Coils Coil 456 479 - -
Dod08g0207 553 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 347 403 IPR000504 GO:0003723
Dod08g0207 553 Gene3D - 181 252 - -
Dod08g0207 553 CDD RRM_AtC3H46_like 338 407 IPR034365 -
Dod08g0207 553 Gene3D - 328 415 IPR012677 -
Dod08g0207 553 ProSiteProfiles Zinc finger C3H1-type profile. 183 210 IPR000571 GO:0046872
Dod08g0207 553 SUPERFAMILY RNA-binding domain, RBD 346 417 IPR035979 GO:0003676
Dod08g0207 553 SMART rrm1_1 337 407 IPR000504 GO:0003723
Dod08g0207 553 MobiDBLite consensus disorder prediction 525 553 - -
Dod08g0207 553 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 187 209 IPR000571 GO:0046872
Dod08g0207 553 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 325 411 IPR000504 GO:0003723
Dod08g0207 553 ProSiteProfiles OST-type HTH domain profile. 234 317 IPR025605 -
Dod08g0207 553 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 551 - -
Dod08g0207 553 Pfam OST-HTH/LOTUS domain 234 312 IPR025605 -
Dod08g0207 553 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0207 Dod-Chr8 2422084 2426155 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0207 - - gmx:100818984 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g0707 05 10843113 10847173 Dod08g0207 08 2422084 2426155 PCT