Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0707 ATGGGTGAACAGATAAAAGGTATGGATATATCAGAGTACACGAGGATTGTTTTTGATAAACTTCAGAAATTTGAGCCGGAGCATGCTACGAAGATAATTGGTTATCTCCTTTTGCAAGACCATGGTGAGCAAGAAATGGTTAAATTGGCTTCATACCCAGACCATTTGATCCGTGAAGTGGCATTTAAGGCCAGAACTGAGCTTCAAAGGTTGACTGCCAAATCAGCCATACATCCAATTTCACTTCCTATTAGCCCTCAACAAGATTTAAGGCATTTGTCAGTAATCTCCCCCCGGACTCCAACTTCACCGACAAGCTTCCAGGTTCCCTCTCCCTATTGGGATCCACAGTCCACTAGCAATGCCAACGCAGAATTCATAGCCTACTTGGACTCTATCTCAGAATTTCAGAAGCACGCCCAATTGTTGAGCCTGGAGAGCCATATAGATGCTATAAATTCTGGGACCGCAGGGATTGCTAATGATTACTATGGATTAGACGCTTCACCTGGCAACTTGGGTGGAAAAACTGGTAGAAGGTTTTCAAGCCTGTCGGAATTTCCTGTCAAGACTTGTCACTATTTCAACAAAGGATATTGTAAGCATGGTGCTAGCTGTAGGTATTACCATGGACAAGTTGTCCCTGAGATGTTCTCTCAGGTGTATGGAAATGATGCTCTTAATGACGACCAGGCGATTTCGCCTGGGTCACTAGCACAATTGGAGTCAGAAATTATTGAGCTCCTGAAAACAAGGAGAGGCAATCCTATTTCAATTGCTTCCCTGCCATTGGCATACTATGAGAAGTATAAAAAGGTACTGCAGGCAGAAGGTTATCTAACTGAGAGCCAGAGACATGGTAAGTCTGGCTACAGTTTGACAAAGCTTCTTGTAAGATTGAAAAATAGTATCCGGCTCATTGACAGGCCTCATGGGCAGCATGCGGTGGTTTTGGCAGAAGACGCTCCAAAATTCATGGGGAAGGGAGAGTTTGGTCAAAATATTAGTGCATCAAGACAAATATATTTGACATTTCCAGCTGACAGCACATTCACAGAGGAGGATGTCTCAAACTACTTCGACACCTTTGGGAGTGTTGAAGATGTAAGAATTCCATGCCAACAGAGAAGGATGTTTGGATTTGTGACCTTTGTTGATCCAGAAACTGTCAAAATGATATTGGAAAAGGGAAATCCTCATTATGTTCGTGGGTCTCGGGTGCTTGTAAAACCTTACAAGGAGAAGCCAAAACTTATTGACAGGAAGCACCCAGATAGGATCGAGCATTCTAGTTGTTACTCACCACATTATGTAGACGTGGACACTGAACTTACAATTCCAAGAAGTTGCGCGAACCCTCGATTTCTAAGGAGGCTGCTCATTGAAGAGCATGAGCAGGCCCTTGAATTTCAGAGAAGGCGTATTATGGAGCTGCAACTGGCCCAGAAATCTTTGTCCAGTTCACCCAATTTTGGCTTCAACATGGATGAATTAAAAGATCATTTGAATATTCAGCCTGCAGAATCTTTTAATTATGCTCCAAACGACAAAGCTGGGTATACAGAAACTGAAGCCGATTACACTGATGAGGACAGCAGTCAAGGGTTAAATCTTCCAGATAGCCCATTTGCATTTCCACTAGACAGTGGAGTTTCAGCAGTCATATAG 1668 0.4311 MGEQIKGMDISEYTRIVFDKLQKFEPEHATKIIGYLLLQDHGEQEMVKLASYPDHLIREVAFKARTELQRLTAKSAIHPISLPISPQQDLRHLSVISPRTPTSPTSFQVPSPYWDPQSTSNANAEFIAYLDSISEFQKHAQLLSLESHIDAINSGTAGIANDYYGLDASPGNLGGKTGRRFSSLSEFPVKTCHYFNKGYCKHGASCRYYHGQVVPEMFSQVYGNDALNDDQAISPGSLAQLESEIIELLKTRRGNPISIASLPLAYYEKYKKVLQAEGYLTESQRHGKSGYSLTKLLVRLKNSIRLIDRPHGQHAVVLAEDAPKFMGKGEFGQNISASRQIYLTFPADSTFTEEDVSNYFDTFGSVEDVRIPCQQRRMFGFVTFVDPETVKMILEKGNPHYVRGSRVLVKPYKEKPKLIDRKHPDRIEHSSCYSPHYVDVDTELTIPRSCANPRFLRRLLIEEHEQALEFQRRRIMELQLAQKSLSSSPNFGFNMDELKDHLNIQPAESFNYAPNDKAGYTETEADYTDEDSSQGLNLPDSPFAFPLDSGVSAVI* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0707 555 ProSiteProfiles Zinc finger C3H1-type profile. 186 213 IPR000571 GO:0046872
Dod05g0707 555 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 8 555 - -
Dod05g0707 555 Gene3D - 183 253 - -
Dod05g0707 555 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 8 555 - -
Dod05g0707 555 Gene3D - 341 417 IPR012677 -
Dod05g0707 555 SUPERFAMILY RNA-binding domain, RBD 350 428 IPR035979 GO:0003676
Dod05g0707 555 CDD RRM_AtC3H46_like 341 410 IPR034365 -
Dod05g0707 555 Pfam OST-HTH/LOTUS domain 237 315 IPR025605 -
Dod05g0707 555 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 190 212 IPR000571 GO:0046872
Dod05g0707 555 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 350 406 IPR000504 GO:0003723
Dod05g0707 555 SMART rrm1_1 340 410 IPR000504 GO:0003723
Dod05g0707 555 Coils Coil 461 481 - -
Dod05g0707 555 ProSiteProfiles OST-type HTH domain profile. 237 321 IPR025605 -
Dod05g0707 555 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 339 414 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0707 Dod-Chr5 10843113 10847173 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0707 - - gmx:100780955 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g0707 05 10843113 10847173 Dod05g0707 05 10843113 10847173 ECH
Dod05g0707 05 10843113 10847173 Dod08g0207 08 2422084 2426155 PCT