Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0162 ATGTCGCAGGAGAAGGGTCGGCCGCTACCTAAGTTTGGTGAATGGGATGTTAATGATCCAGCTTCAGCTGAAAGTTACACTGTGATATTTAACAAAGCTAGGGATGAGAAAAAGACAGGTGGCAAACCTGAGTCACCTGAGAAAAAGGCTGATCCTCATACCAAGCCTGCATTAGATCCTGCCAAAACTCACAGTAAAAAATGGTTTTGCTGCATACAAAATCCTCCTGCTGAATCATAG 240 0.4375 MSQEKGRPLPKFGEWDVNDPASAESYTVIFNKARDEKKTGGKPESPEKKADPHTKPALDPAKTHSKKWFCCIQNPPAES* 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0162 79 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 4 39 IPR008700 -
Dod08g0162 79 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 1 69 IPR040387 -
Dod08g0162 79 MobiDBLite consensus disorder prediction 31 62 - -
Dod08g0162 79 MobiDBLite consensus disorder prediction 31 79 - -
Dod08g0162 79 PANTHER RIN4, PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR CLEAVAGE SITE-RELATED 1 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0162 Dod-Chr8 1766477 1768694 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0162 - - gmx:100305826 139.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0162 08 1766477 1768694 Dod08g0162 08 1766477 1768694 ECH
Dod05g0672 05 10001531 10005054 Dod08g0162 08 1766477 1768694 PCT