Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0672 ATGTCGGAGAAGGGTCAGCCACTACCAAAATTTGGTGAATGGGATGTCAATGATCCAGCCTCAGCTGAGGGGTTTACAGTGATTTTTAACAAGGCTAAGGCTGAGAAAAAGACTGGTGGCAATCCTGAGTCACCAGGAAAGGCTGCTGTTGATCCTCATACCAAACCTGCATTAGATCCTGGCAAAGCTCAGAGTAAAAAATGGTTTTGCTGCATACAGAGCCCTCCTGCAGAATCATAG 240 0.4625 MSEKGQPLPKFGEWDVNDPASAEGFTVIFNKAKAEKKTGGNPESPGKAAVDPHTKPALDPGKAQSKKWFCCIQSPPAES* 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0672 79 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 3 38 IPR008700 -
Dod05g0672 79 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 1 77 IPR040387 -
Dod05g0672 79 PANTHER RPM1-INTERACTING PROTEIN 4-LIKE 1 77 - -
Dod05g0672 79 MobiDBLite consensus disorder prediction 34 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0672 Dod-Chr5 10001531 10005054 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0672 - - gmx:100305826 151.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g0672 05 10001531 10005054 Dod08g0162 08 1766477 1768694 PCT