Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1962 ATGTCTTCACCAAGCAAGCGGCGAGAGATGGACTTGATGAAACTGATGATGAGTGACTACAAGGTGGAGATGATCAATGATGGAATGCAAGAGTTTTGTGTCCATTTCCATGGACCCAATAAGAGTCCTTATCATGGAGGAGTGTGGAAAGTAAGAGTTGAGCTTCCAGATGCTTATCCTTATAAATCTCCTTCCATTGGCTTTGTCAATAAGATCTATCACCCAAATGTTGATGAGATGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGTCCCATGTTTGATCTTGTCAATGTATTTGAAGTGTTTCTACCACAACTTCTTCTGTATCCCAATCCATCAGACCCCTTGAATGGAGAAGCTGCAGCTTTACTGATGCGTGATCGAGCCTCTTATGAACAGAGGGTTAAAGAATATTGTGAGAAGTATGCTAAGCCTGAAGACATAGGAGCTGCAACAGAAGAGAAATCTAGTGATGATGAGGAGCTAAGTGAAGATGAATATGATTCTAGTGATGAACAGGTCGCTGGTAAGGCAGACCCCTAG 555 0.4216 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFCVHFHGPNKSPYHGGVWKVRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRASYEQRVKEYCEKYAKPEDIGAATEEKSSDDEELSEDEYDSSDEQVAGKADP* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1962 184 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 184 - -
Dod07g1962 184 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Dod07g1962 184 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 3 184 - -
Dod07g1962 184 CDD UBCc 7 143 IPR000608 -
Dod07g1962 184 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Dod07g1962 184 SMART ubc_7 4 148 - -
Dod07g1962 184 Pfam Ubiquitin-conjugating enzyme 10 142 IPR000608 -
Dod07g1962 184 Gene3D Ubiquitin Conjugating Enzyme 1 161 IPR016135 -
Dod07g1962 184 SUPERFAMILY UBC-like 4 148 IPR016135 -
Dod07g1962 184 MobiDBLite consensus disorder prediction 150 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1962 Dod-Chr7 50179339 50182349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1962 3 115 Miscellaneous Gene Families AT3G17000 23.140 8.95e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1962 K10576 - gmx:100804969 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g1962 07 50179339 50182349 Dod07g1962 07 50179339 50182349 ECH
Dod01g0730 01 13171293 13175263 Dod07g1962 07 50179339 50182349 PCT