Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g0730 ATGTCTTCCCCAAGCAAGCGGCGAGAGATGGACTTGATGAAACTGATGATGAGTGATTACAAGGTGGAGATGATTAATGATGGAATGCAAGAGTTTTGTGTTCATTTCCATGGACCCAATGACAGTCCTTATCATGGTGGTGTGTGGAAAGTAAGGGTCGAGCTGCCAGATGCCTATCCTTATAAATCTCCTTCTGTAGGCTTTGTCAATAAGATCTATCACCCAAATGTTGATGAAATGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTTTGATCTTGTCAATGTGTTTGAGGTGTTTCTACCACAGCTGCTTCTGTATCCCAATCCATCTGACCCTTTGAATGGAGAAGCTGCAGCATTAATGATGCGTGACCGAGCTAGTTACGATCAAAGGGTTAAGGAGTATTGTGAGAAGTATGCTAAACCAGAAGACATAGGTGCTGCCCCAGAAGAGAAATCAAGTGATGAGGAGATGAGTGAAGATGAATATGACTCTAGTGATGAACAGGTGGCTGGTAAAGCAGATCCCTAG 552 0.4348 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFCVHFHGPNDSPYHGGVWKVRVELPDAYPYKSPSVGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRASYDQRVKEYCEKYAKPEDIGAAPEEKSSDEEMSEDEYDSSDEQVAGKADP* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g0730 183 Pfam Ubiquitin-conjugating enzyme 10 142 IPR000608 -
Dod01g0730 183 Gene3D Ubiquitin Conjugating Enzyme 1 159 IPR016135 -
Dod01g0730 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Dod01g0730 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Dod01g0730 183 SUPERFAMILY UBC-like 4 148 IPR016135 -
Dod01g0730 183 MobiDBLite consensus disorder prediction 146 183 - -
Dod01g0730 183 CDD UBCc 7 143 IPR000608 -
Dod01g0730 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 183 - -
Dod01g0730 183 MobiDBLite consensus disorder prediction 146 160 - -
Dod01g0730 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 3 183 - -
Dod01g0730 183 SMART ubc_7 4 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g0730 Dod-Chr1 13171293 13175263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g0730 3 115 Miscellaneous Gene Families AT3G17000 23.967 1.12e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g0730 K10576 - gmx:100804969 350.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0730 01 13171293 13175263 Dod01g0730 01 13171293 13175263 ECH
Dod01g0730 01 13171293 13175263 Dod07g1962 07 50179339 50182349 PCT