Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0728 ATGGCAACTCTGCAGTACTCTCTTGCATTGTCATCTCCGCTCTCCAACTCTCTACACAAGTCACGCTCATGCTCAGTTCCATCTTCAATTGTCCATGGAATTACACACTCGTCATTCAATGGTCAATCTTTACTCCTGCCACGTTTGAGGCTACCAAAGCTAACACAAAATTCTCCCATGCACGGGCCTGTTATCATGATGGTCAAGCCAACGATACAGTTCATTCAAGGAACAGATGAACTAACAATACCAGATGTGAGGCTAACTAAATCAAGGGATGGAACAAATGGAATGGCTATCTTCAGGTTTGATCAACCATCTGTTTTCGACTCTTCCGGCGAAGTAGGCGACATCACTGGTTTGTACTTGATTGACGAAGAAGGGGTCCTTCAGTCGGTCGATGTAAACGCTAAATTCGTCAACGGTAAGCCTTCCACAATCGAAGCCAAGTATGTAATGAGGAGTCCAAAGGAGTGGGATCGGTTCATGAGATTCATGGAGAGATACTCTAATGCAAACGGCTTGCAATTCATTAAGAAATGA 543 0.442 MATLQYSLALSSPLSNSLHKSRSCSVPSSIVHGITHSSFNGQSLLLPRLRLPKLTQNSPMHGPVIMMVKPTIQFIQGTDELTIPDVRLTKSRDGTNGMAIFRFDQPSVFDSSGEVGDITGLYLIDEEGVLQSVDVNAKFVNGKPSTIEAKYVMRSPKEWDRFMRFMERYSNANGLQFIKK* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0728 180 Hamap Photosystem II reaction center Psb28 protein [psb28]. 69 178 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Dod07g0728 180 Gene3D Photosystem II Psb28 70 180 IPR038676 -
Dod07g0728 180 PANTHER - 7 180 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Dod07g0728 180 Pfam Psb28 protein 72 177 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Dod07g0728 180 TIGRFAM PS_II_psb28: photosystem II reaction center protein Psb28 72 178 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0728 Dod-Chr7 10170328 10172798 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0728 K08903 - gmx:100306491 298.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g0728 07 10170328 10172798 Dod07g0728 07 10170328 10172798 ECH
Dod01g2581 01 65027264 65029452 Dod07g0728 07 10170328 10172798 PCT