Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2581 ATGGCAGCTAGTAGCCTGCACTCCCTGGCATTGTCTTCTCCGCTCTCCAAAGCTCTTCATAACACACGTTCATACACAGTCCCGTCTCCGATTGTTCATTGCAGCACGCACTCCTCATTCAATGGCCAATCTGTACAGCTCCCACGTTTGAGGTTACCTAGGCTAACACAAAGTCCTCCCAAGCTCGCGCCTGTTATCATGATGGTCAGACCAACCATACAGTTCATCCAAGGAACAGATGAACTGACAATACCAGACGTGAGGCTGACCAAATCAAGAGATGGAACAAATGGCATGGCTATCTTCAGCTTTGAACAACCCTCAGTTTTTGATTCTTCTGGTGAAGTTGGCGATATCACTGGTTTATATATGATTGATGAGGAAGGAGTCCTTCAGTCAGTTGATGTGAGTGCTAAATTTGTCAATGGAAAGCCCTCAAGAATTGAAGCAAAGTATGTGATGCGGACTCCAAGGGAGTGGGATAGGTTCATGAGATTCATGGAGCGATACTCTAATGCAAATGGTTTGCAATTCATAAAAAAATAA 546 0.4469 MAASSLHSLALSSPLSKALHNTRSYTVPSPIVHCSTHSSFNGQSVQLPRLRLPRLTQSPPKLAPVIMMVRPTIQFIQGTDELTIPDVRLTKSRDGTNGMAIFSFEQPSVFDSSGEVGDITGLYMIDEEGVLQSVDVSAKFVNGKPSRIEAKYVMRTPREWDRFMRFMERYSNANGLQFIKK* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2581 181 Hamap Photosystem II reaction center Psb28 protein [psb28]. 70 179 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Dod01g2581 181 TIGRFAM PS_II_psb28: photosystem II reaction center protein Psb28 73 179 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Dod01g2581 181 Pfam Psb28 protein 73 178 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Dod01g2581 181 Gene3D Photosystem II Psb28 71 181 IPR038676 -
Dod01g2581 181 PANTHER - 1 181 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2581 Dod-Chr1 65027264 65029452 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2581 K08903 - gmx:100780777 276.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2581 01 65027264 65029452 Dod07g0728 07 10170328 10172798 PCT