Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0639 ATGTTAGATTTGCGTTTAGCTTCTGTTGAAAATGAAATTGGGATGTCTGGCGAAGAATTTGAAGGACAAGATGCAGGCTATGTGCCTGAGAATCTTGAATTTCCGCAAAACCATTCTGTTGAGCATGATGATGAAGGGAATGTGATTGATGAGACTGGGTTTCCTGAATTGCAGCCTGATGAACATGATGCTGATGCAAGCAATTTGGATGAGGAAGCAAATCTTCCCGAAAATAAGTTTGATGGCCAGGATGTTGAAGATTTGCCTGGAGACGCCGATGCTCCTCCACAAGAGCATGTTGAGGAGGAGCACCGCGATGTGGGAGACGTGGTCGAGAATTTTGGTTCTCCGGAGAAACAGGGAGCTGATGATGGTTCGAAAGGAAATGAGATAAAGAAGTGGCCTGGGTGGCCCGGAGAGAATGTTTTCAGGATGTTGGTTCCGGTGCAGAAGGTTGGCAGTATTATTGGCCGCAAGGGAGAGTTTATTAAGAAAATCACCGAAGAGACTAAGGCTCGGATTAAAATTCTTGATGGTCCACCTGGAACTACAGAAAGAGCAGTAATGGTTTCTGGAAAAGAAGAGCCAGATCGCGACATACCACCTGCTGTGGAAGGTTTGTTAAGAGTTCATAAACAAGTTGTCAATGTTGACCGTGATCCTGCAGATAGTGCATCAGGTGCAGGACGCCCAGTTGTAACAAGGCTTCTGGTGGCAGATACTCAAGCAGGAAGCTTGATTGGGAAGCAGGGGTCCACTATAAAAACCTTTCAAGATGCCGCTGGTTGCAATATACGTGTTCTTGGAGCAGAACACCTGCCAGTTTTTGCTTTGCGAGATGATAGTGTTGTTGAAATACAAGGGGAGTCTGCTGGCGTTCACAAGACAGTTGAACTTATTGCAATTCATTTACGCAAGTTCTTGGTTGACCGCAGCATAGTTGGAGTATTTGAAACACAGATGCAAAGGCCAGATGCTCGAGTTACACAGAATATGCCTCCACCCCAACCTTGGGGTCCTCCTCCTCCTCCTCAAGGGTTTCCCACTCCTGGCACTGGCGGTGGACCTGCTTTTGCACCCAATCCTCAATATATGCCACCTCCTTCACATAACTATGATAACTACTACCCACCTGCAGATCTGCCTCCCATGGACAAGCACCTTCAGGGGCCTCCACCTGCATATGCAAGGGATACTTCTATGGGAATTCATTCATCCGTTGCACAGCCACAGCAGTCTGTTGTGACTAAGGTCACACAGCACATGCAAATTCCTCTAACCTATGCAGATGCCGTTATTGGAGCATCAGGATCAAATATCAGCTACATTCGTCGTTCTAGTGGAGCAAGTATTACAATTCAGGAGACAAGGGGTGTGCCAGGGGAGATGACTGTTGAGATAAGTGGTACTGCTTCGCAGATACAGACAGCCCAACAGCTGGTGCAGAATTTCATGGCTGAAGCTGCAAATGCGGCACAAGATCCTATGGGAGGATCAATTAACCAAGGTTACAATTCCTATCCTACTAATGCTCCTGTTTATGCATCTCCACCATCAAGCGCCGCGGGTCATACAGGCCATGCGCCTTCTGCAGATTATGGACCCGTGTATGGCACTAATTATGGTTATTAA 1632 0.47 MLDLRLASVENEIGMSGEEFEGQDAGYVPENLEFPQNHSVEHDDEGNVIDETGFPELQPDEHDADASNLDEEANLPENKFDGQDVEDLPGDADAPPQEHVEEEHRDVGDVVENFGSPEKQGADDGSKGNEIKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTTERAVMVSGKEEPDRDIPPAVEGLLRVHKQVVNVDRDPADSASGAGRPVVTRLLVADTQAGSLIGKQGSTIKTFQDAAGCNIRVLGAEHLPVFALRDDSVVEIQGESAGVHKTVELIAIHLRKFLVDRSIVGVFETQMQRPDARVTQNMPPPQPWGPPPPPQGFPTPGTGGGPAFAPNPQYMPPPSHNYDNYYPPADLPPMDKHLQGPPPAYARDTSMGIHSSVAQPQQSVVTKVTQHMQIPLTYADAVIGASGSNISYIRRSSGASITIQETRGVPGEMTVEISGTASQIQTAQQLVQNFMAEAANAAQDPMGGSINQGYNSYPTNAPVYASPPSSAAGHTGHAPSADYGPVYGTNYGY* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0639 543 Gene3D - 140 308 - -
Dod07g0639 543 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 411 488 IPR036612 GO:0003723
Dod07g0639 543 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 223 313 IPR036612 GO:0003723
Dod07g0639 543 CDD KH-I 419 482 - -
Dod07g0639 543 ProSiteProfiles Type-1 KH domain profile. 140 207 - -
Dod07g0639 543 CDD PCBP_like_KH 233 301 - -
Dod07g0639 543 SMART kh_6 230 305 IPR004087 GO:0003676
Dod07g0639 543 SMART kh_6 139 212 IPR004087 GO:0003676
Dod07g0639 543 SMART kh_6 416 486 IPR004087 GO:0003676
Dod07g0639 543 PANTHER POLY(RC)-BINDING-LIKE PROTEIN 66 537 - -
Dod07g0639 543 Gene3D K Homology domain, type 1 405 493 IPR036612 GO:0003723
Dod07g0639 543 MobiDBLite consensus disorder prediction 330 350 - -
Dod07g0639 543 Pfam KH domain 234 300 IPR004088 GO:0003723
Dod07g0639 543 Pfam KH domain 143 195 IPR004088 GO:0003723
Dod07g0639 543 Pfam KH domain 419 482 IPR004088 GO:0003723
Dod07g0639 543 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 66 537 - -
Dod07g0639 543 MobiDBLite consensus disorder prediction 15 130 - -
Dod07g0639 543 Coils Coil 474 494 - -
Dod07g0639 543 MobiDBLite consensus disorder prediction 36 112 - -
Dod07g0639 543 MobiDBLite consensus disorder prediction 177 200 - -
Dod07g0639 543 CDD PCBP_like_KH 142 211 - -
Dod07g0639 543 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 135 195 IPR036612 GO:0003723
Dod07g0639 543 ProSiteProfiles Type-1 KH domain profile. 231 300 - -
Dod07g0639 543 ProSiteProfiles Type-1 KH domain profile. 417 481 - -
Dod07g0639 543 MobiDBLite consensus disorder prediction 326 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0639 Dod-Chr7 8532420 8537807 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0639 K21444 - gmx:100818363 813.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g0639 07 8532420 8537807 Dod07g0639 07 8532420 8537807 ECH
Dod01g2499 01 64006757 64011216 Dod07g0639 07 8532420 8537807 PCT