Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2499 ATGTCTGGGGAAGAGTTTGATGGACATGATATAGGCTATGTACCTGAGGAACCCGGTTTCCCACAAAATCATTCTGATGTACTTGATGAAGGGAATGTGTTTGATAGCTCAGGGTTTCCTCAGCAGCCCCCTGATGAACATGATGCAGTCACTTTGGCTGAGGATGCCAATCCTGCTGAGAATGTTTTTGATGCCTATGATGTTGGAGGTTTTCCTGCAGACACAGGTCCCCCACCACAACAACAGGAGCATGTCATCGAGGAACATCATGATTTAGGAGATGTGACTGAAAATTTGGGTTCTTCGCAACAACAGGGGTCTGACAATGACTCCAAAGGAAACGAAATTAAAAAGTGGCCTGGGTGGCCTGGAGAGAATGTGTTCAGGATGTTGGTTCCGGTGCAAAAGGTTGGCAGTATTATTGGCCGAAAGGGCGAGTTTATTAAGAAGATCACGGAAGAGACCAAGGCACGCATCAAGATTCTGGATGGTCCACCTGGAACCTTGGAAAGAGCAGTAATGGTTTCTGCAAAAGAAGAGCCAGATCGCCCCATACCACCTGCTGTTGATGGTTTGTTAAGGGTTCATAAACAAGTTGTCAATGTTGACCAAGATTCTGCAGATGGCACATCAGGTACTGGAAGCTCAGTTGTCACTAGGCTTCTGGTGGCGGATACTCAAGCAGGAAGCTTGATTGGGAAGCAAGGTGCCACTATAAAATCCATTCAAGATGCCTCTGGTTGCAATATACGCGTTCTTGGATCAGAAAACCTGCCAGTTTTTGCTTTGCGAGATGATAGTGTTGTTGAAATACAAGGGGAATCTGCTGGAGTTCACAAGGCGGTTGAACTTATTGCAATTCAGTTACGGAAGTTCTTGGTTGACCGCAGCATTGTTGGAGTATTTGAAACACAGATGCAAAGGCCAGATGTTCGAGTTAACCACAATGTGCCACCACGCCAAAACTGGGTTCCTCCTCCTCAAGGGTTTCCAGCTCCTGGTGGTGGTGGACCTTCTTTTGCACCCAATCATCAATATATGCCGCCCCCGCCAGCACATCACTACGATAGTTATTACCCACCTGCTGACCTGCCTCCCATGGACAAGCAATTCCATCAGGGTCCACCACCTGCCTATGCGAGAGATGCTTCTGTGGGAATTCATTCGTCAAGTGCACAACCACAACAATCTGTTGCAACTAAGGTCACACAGCACATGCAAATTCCTCTATCATATGCAGATGCTGTTATTGGAGCATCAGGTTCAAATATCAGCTACATTCGTCGTACCAGTGGAGCAAGTGTTACGGTTCAGGAGACAAGGGGTGTGCCAGGGGAGATGACTGTTGAGATAACTGGAACTTCTTCACAGATACAGGCAGCCCAGCAGCTGGTTCAGAATTTCATGGCTGAAGCTGCAAGTGCAGCTCAGGATCAAATGGGGGGATCAGTTAGCCAAGGTTACAATTCCTATCCAAGTAATGCTCCTATATATGCTTCTCCACCCACTAGCGCTGGTGGCCAAACAGGCCTTGCGCCTTCTGCAGATTATGGCACCATGTATGGTGCCAATTATGGCTATTAA 1584 0.4735 MSGEEFDGHDIGYVPEEPGFPQNHSDVLDEGNVFDSSGFPQQPPDEHDAVTLAEDANPAENVFDAYDVGGFPADTGPPPQQQEHVIEEHHDLGDVTENLGSSQQQGSDNDSKGNEIKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTLERAVMVSAKEEPDRPIPPAVDGLLRVHKQVVNVDQDSADGTSGTGSSVVTRLLVADTQAGSLIGKQGATIKSIQDASGCNIRVLGSENLPVFALRDDSVVEIQGESAGVHKAVELIAIQLRKFLVDRSIVGVFETQMQRPDVRVNHNVPPRQNWVPPPQGFPAPGGGGPSFAPNHQYMPPPPAHHYDSYYPPADLPPMDKQFHQGPPPAYARDASVGIHSSSAQPQQSVATKVTQHMQIPLSYADAVIGASGSNISYIRRTSGASVTVQETRGVPGEMTVEITGTSSQIQAAQQLVQNFMAEAASAAQDQMGGSVSQGYNSYPSNAPIYASPPTSAGGQTGLAPSADYGTMYGANYGY* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2499 527 CDD PCBP_like_KH 218 286 - -
Dod01g2499 527 CDD PCBP_like_KH 127 196 - -
Dod01g2499 527 Gene3D - 125 294 - -
Dod01g2499 527 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 60 521 - -
Dod01g2499 527 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 117 179 IPR036612 GO:0003723
Dod01g2499 527 ProSiteProfiles Type-1 KH domain profile. 125 192 - -
Dod01g2499 527 Coils Coil 458 478 - -
Dod01g2499 527 MobiDBLite consensus disorder prediction 96 110 - -
Dod01g2499 527 Pfam KH domain 403 466 IPR004088 GO:0003723
Dod01g2499 527 Pfam KH domain 219 285 IPR004088 GO:0003723
Dod01g2499 527 Pfam KH domain 128 180 IPR004088 GO:0003723
Dod01g2499 527 CDD KH-I 403 466 - -
Dod01g2499 527 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 209 297 IPR036612 GO:0003723
Dod01g2499 527 MobiDBLite consensus disorder prediction 96 120 - -
Dod01g2499 527 Gene3D K Homology domain, type 1 388 477 IPR036612 GO:0003723
Dod01g2499 527 MobiDBLite consensus disorder prediction 1 56 - -
Dod01g2499 527 ProSiteProfiles Type-1 KH domain profile. 401 465 - -
Dod01g2499 527 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 392 472 IPR036612 GO:0003723
Dod01g2499 527 ProSiteProfiles Type-1 KH domain profile. 216 285 - -
Dod01g2499 527 PANTHER POLY(RC)-BINDING-LIKE PROTEIN 60 521 - -
Dod01g2499 527 SMART kh_6 215 290 IPR004087 GO:0003676
Dod01g2499 527 SMART kh_6 124 197 IPR004087 GO:0003676
Dod01g2499 527 SMART kh_6 400 470 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2499 Dod-Chr1 64006757 64011216 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2499 K21444 - gmx:100813235 814.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2499 01 64006757 64011216 Dod07g0639 07 8532420 8537807 PCT