Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0288 ATGGCTTCTCCACACATTCTCTGTCTCGTCTCTATCATCATCACCTTCACTTCATTGGTATCATCATCGACAACCACGCCCAACAACAACAATAACAACACCATCACCATTCCTCTTTCTCCCTTATTCACAGCCAACCACCACCCTTCCTCGGACCCATTCCAAACCCTCAAACTCGTTTCCTCTGCTTCCATAACAAGAGCCCACCACCTCAAACACCGCAAAGCCCAACTCAACACTCCCCTCGCCAAGACCCTAATTCACCCCAAAAGCTATGGAGGATACTCCATTGACCTCAAATTAGGAACACCACCACAAACCTTCTCTTTTGTTTTGGACACCGGAAGCAGCCTCGTATGGTTCCCATGTTCCTCTCGTTACCTATGCGCCAAATGCAACATAGACACAAACAAAATCCCAAAATTCATCCCTAAAAACTCTTCCACTTCCAAGATCATAGGCTGCAAAAGCCCGAAATGCGCGTGGGTTTTCGGGCCCACCGTGCAATGCCAAAATTGCCCAACTCCCGACAACAACCAGAATAATAATTGCTCGCAAATTTGCCCACCCTATACAATTCAGTATGGAATGGGCTCAACTGCGGGCTTTCTACTCTCGGAAAATTTAAATTTTCCCGGGAAAATAGTCCCGGATTTTCTCATTGGCTGCTCCCTCATCTCTATCTACCAGCCCGCTGGAATAGTCGGGCTGGGCCGGGGGCCGGAGTCACTTCCGGCCCAGATGAGCCTTAGGAGATTCTCCTACTGCCTCCTCTCCCACCGCTTCGACGACTCGCTGGAGACCTCAGACCTAGTCTTGTACGGCGGCTCCACCGTCGGAAAAACCGCTGGCGTCAGCTACACGCCGTTTTGGAAGAATCCGGCGGCCGAGAATGCCGCGTTTGGGACATACTACTACGTGACGATCCGGAAGGTGATCGTCGGCGGAAAGCGCGTGAGGATTCCGGCGAAGCTTCTGGAGCCTGATTCCGCCGGTAACGGCGGTTCAATCGTGGATTCTGGCACCACGTTCACGTTCATGGAGAAGCCGATTTTCGATTTGGTGGCGCGTGAGTTCGAGAATCAGGTGAATTTCACGAGGGACAGGGAGGTTGAGAAGCGATCGGGGCTGAGTCCGTGCTTCGCCGTCGCCGGCAGAGAAACGGCGTCGTTTCCGGCGCTGACGCTGCAGTTTAGGGGCGGCGCCAAGATGACGCTGCCGACGGCGAATTATTTTTCGCTTGTTGGGAAGAAATCCGACGTGGCGTGTCTGACGATTGTTTCCGATGAGGTTGTTACGGCGGCACGTGGACCGGCGGTGATACTGGGGAACTATCAGCAGCAGAATTTCTACGTGGAGTATGATTTGGAGAACGAGAGGTTCGGGTTTCGGAGTCAGAGTTGCAAACGCAGCGTTTAG 1419 0.5278 MASPHILCLVSIIITFTSLVSSSTTTPNNNNNNTITIPLSPLFTANHHPSSDPFQTLKLVSSASITRAHHLKHRKAQLNTPLAKTLIHPKSYGGYSIDLKLGTPPQTFSFVLDTGSSLVWFPCSSRYLCAKCNIDTNKIPKFIPKNSSTSKIIGCKSPKCAWVFGPTVQCQNCPTPDNNQNNNCSQICPPYTIQYGMGSTAGFLLSENLNFPGKIVPDFLIGCSLISIYQPAGIVGLGRGPESLPAQMSLRRFSYCLLSHRFDDSLETSDLVLYGGSTVGKTAGVSYTPFWKNPAAENAAFGTYYYVTIRKVIVGGKRVRIPAKLLEPDSAGNGGSIVDSGTTFTFMEKPIFDLVAREFENQVNFTRDREVEKRSGLSPCFAVAGRETASFPALTLQFRGGAKMTLPTANYFSLVGKKSDVACLTIVSDEVVTAARGPAVILGNYQQQNFYVEYDLENERFGFRSQSCKRSV* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0288 472 PRINTS Pepsin (A1) aspartic protease family signature 336 347 IPR001461 GO:0004190|GO:0006508
Dod07g0288 472 PRINTS Pepsin (A1) aspartic protease family signature 440 455 IPR001461 GO:0004190|GO:0006508
Dod07g0288 472 PRINTS Pepsin (A1) aspartic protease family signature 101 121 IPR001461 GO:0004190|GO:0006508
Dod07g0288 472 SUPERFAMILY Acid proteases 91 468 IPR021109 -
Dod07g0288 472 Pfam Xylanase inhibitor C-terminal 305 464 IPR032799 -
Dod07g0288 472 Gene3D Acid Proteases 74 266 IPR021109 -
Dod07g0288 472 PANTHER BNACNNG47670D PROTEIN 8 468 - -
Dod07g0288 472 Pfam Xylanase inhibitor N-terminal 95 261 IPR032861 -
Dod07g0288 472 CDD pepsin_A_like_plant 94 468 IPR034161 -
Dod07g0288 472 ProSiteProfiles Peptidase family A1 domain profile. 95 464 IPR033121 -
Dod07g0288 472 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 110 121 IPR001969 GO:0004190|GO:0006508
Dod07g0288 472 Gene3D Acid Proteases 276 472 IPR021109 -
Dod07g0288 472 PANTHER OS07G0603500 PROTEIN-RELATED 8 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0288 Dod-Chr7 3585912 3587723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0288 93 470 Miscellaneous Gene Families AT1G44130 23.559 1.11e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0288 - - adu:107476162 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g0288 07 3585912 3587723 Dod07g0288 07 3585912 3587723 ECH
Dod01g2936 01 69823818 69825703 Dod07g0288 07 3585912 3587723 PCT