LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod07g0198	ATGATGACGCGTTCCCCTACTCCAATTTGTGATTGCACTTCTCTAACCAGAATTAGAAATTGTTGTACAGAACCAAATTATTCTGCAAAAGAAGGCATTTCTGACAGACAAACATTTGAGGCTGCAGAAAGACCACTGACATGCATCGATGCTACAGTTGCAGAGATGGGTGCATCACTCACAAGAAAGAAGAGAAGTAGAAAGAAAAGTGCTCTTTCCAGTCCAGCAGATTCTAGCACAAATGAGATGCAACAGCACCATAATTTTGGGCTGGGAAGTTATCAGCTGCCATTGGGCACGTCATTAGGTATTGCTCATGGAGTAATATGGGAAACCATGCATTATATTGATGCATTAGCAGAGCGATTTAGACAACTAACCATGAACAGAGAAGCCACAGACATTGCTTCACATGAGCAGAATGCACTTGTCGCTTATAAACACCAAAATATTGTGGCAGATGGCACCATCATTCCCTTTCAGGGCCCATTTGATCCCATCAAAAAACACCGTCGGCCTAAAGTAGACCTTGATGAGGAGACTGATCGAGTGTGGAAGCTTTTGATGATAGATATAAACAGTCATGGGATTGATGGAACAAATGAAGACAAGGCCAAATGGTGGGAAGAAGAGCGGAATGTGTTCCGAGGGCGAGCAGACTCATTTATTGCACGAATGCATCTTGTACAAGGAGACAGGCGATTTTCTCGATGGAAGGGATCAGTAGTTGATTCAGTAGTAGGAGTCTTCCTCACTCAAAATGTCTCAGATCATCTTTCCAGTTCTGCATTCATGTCCCTTGCGGCACGATTTCCCCAAAAGTCAAGCAGCACATGCAAAACATACAATGGGGAAGGCACAAGCCTGATAGTCAAAGAACCACAGGTGCACATGGTGGAGCCAGAAGAGAATACAGAATGGGATGTAAAAACTTTGAATCAACCTGTTTATGACCAGAGTTCGATGACAATAGACATGGTTGAGCATTCTGGAGAAAAGGAAGCTGTCAACAGCAGTGATTCTGGCAGAACTGCCAGTAGTGTAACTAGCTTAATGGACGAATCAAACGGGAGACTGTCAGAATCATCTCAAAGGAAGACTGAGGAAAGGGAAGAAAAATCATGTTACGAGGGTGTGAGGACAAATGAAATAGTTTCATCCCAAAGCTTTGTCATTTCATCTCAAGTATCTGGATATCTTTTAAGTGATCAAAACCCTGAGAAGATAGGATCCTGCTCAGATAGCAACTCAGAAGTAGAAGATTTGTCAAGCACAACAAAGGACAACAGCATTCATAACTGCATTCCCCATGAATATACTTTGAAACTCACCCCAGACTCAGGTGGGCTTGAAGCTAGTTGCTTTGATCCTTTCAGAACAGAAGCCTCATCAAGTGGCTTCTTAAAGAATAAAGATAAAAATGACAACAGACCTTGTTTTCAAAGATCGGAGTCTGCCAGCCAAGTTGTATCCCAGGAACAAAGCAATCACACGCAGCAAAGCTTTTTTAACATTTCTGGGCAAACTGAAGATCTTATGCAGAAAGAAAGGCAGTTAGATCTTTGTGACCACAAAGATGCGGTGAGGAATGAAATCAATGAGGTAAGTTCTACTCCAAAGAAATTAAAGAGCACAGGGCAACGACAGGTGAAAAATGATGACTTTAACTGGGATAGTTTAAGAATAAAAGCACAAGCTAAGGCAGGGAAAAGAGAAAAGACAGAAAACACCATGGATTCTTTGGACTGGGATGCTGTGAGACGTGCAGATGTCAGTGAAATTTCAAATGTCATCAAAGAACGGGGCATGAACAACAGGCTTGCAGAACGTATAAAGAATTTCCTGAATCGACTGGTTGAAGATCATGGAGACATTGACCTTGAGTGGCTAAGAGATGTTGCACCTGACCAAGCAAAGGAATACTTGCTCAGCATAAGAGGATTGGGATTGAAAAGTGTGGAATGTGTGCGGCTTTTAACACTACACCATCTTGCCTTCCCAGTGGACACCAATGTTGGACGTATAGCAGTACGACTTGGATGGGTACCTCTCCAGCCACTGCCTGAGTCATTACAGTTGCATCTCCTAGAATTGTACCCAGTTTTGGAGTCCATTCAAAAATATCTCTGGCCTCGACTGTGCAAACTAGATCAAAGAACATTATATGAGCTGCATTACCAGATGATTACATTTGGAAAGGTCTTCTGTACAAAAAGCAAACCAAATTGCAATGCATGCCCAATGAGAGGAGAATGTAGACACTTTGCTAGTGCATTTGCTAGTGCAAGACTTGCCCTGCCAGGACCCGAGCAGAGGAGTATAGTTAGCACTTCTGAAAACAATGTGACTGATCAGAACCCATCTGTAATCATCAATCAGTTGCACTTGCCTCCCCCTGAGAATGCAAGCCAAGGAGCAGAAATTCAACAAACAGAAGTGAGCAGACAACTGGAATTAAAATCTGAATTAGAAATCTGCCAACCTATTATTGAAGAGCCAACAACTCCAGAGCCAGAATGCTCACAAGTATCACAAATTGATATGGAGGATGCCTTCATTGAGGATTCATGTGAAATTCCCACCATCAAACTAAACATGGAAGAGTTCACTCTGAATTTACAAAATTATATACAAGAAAGTATGGAACTTCAAGAAGGGGAGATATCTAAGGCATTGGTTGCTTTGAATCCAGAAGTTGCTTCCATTCCTACACCCAAGCTAAAGAATGTGAGCCGATTACGAACAGAGCATTGTGTTTATGAACTCCCAGATACGCATCCTCTTTTGGAAGGGTGGGAGAGGCGAGAGCCTGATGATCCAGGCAAATACCTTCTTGCTATCTGGACCCCAGGTGAGACGGCAAACTCTATACAGCCACCTGAAAGCAAATGCAGCTCTCAAGAATGTGGCCAACTCTGTAACGAGAAGGAATGTTTCTCATGCAACAGTTTCCGTGAAGCAAATTCACAGATAGTTAGAGGGACAATCCTGATACCATGTCGAACAGCCATGCGGGGAAGCTTTCCACTAAATGGCACCTATTTCCAAGTCAATGAGGTATTTGCTGAGCATGACTCTAGTCTTAACCCAATTAGTGTTCCACGAAGTTGGATTTGGAACCTGAATAGGCGAACAGTATATTTTGGAACCTCCATGCCTACAATATTTAAAGGTTTATCAACACAAGAAATTCAACAATGCTTTTGGAGAGGTTATGTCTGTGTGCGGGGGTTTGACAGGGCAACAAGAGCACCGCGTCCTCTGATGGCTAGACTGCACTTCCCAGCTAGCAAGTTGCCCAGGACTAAAGACCCAGCTAGCAAGTTGCCCAAGACTAAAGAGAATTCTAGAAGGAAAAAGTCGACTGCTGCGAAATCGCAGGGACCGGAACCCAATCCTGGACAAGCAGAATTGCTGATTGCTGCGAAATCACAAGTACCGGAACCAAATCCAGAACACCCAGAATTGCTGATTGCTGCGAAATCACAAGGACAGGAACCAAATCCGGAACACCCCAAATTGCTGACTGTACAGGAACCAAATCCAGACCACCCGGAATTGCTTTCTCACGGTCACAACGTTCAGTAA	3588	0.4331	MMTRSPTPICDCTSLTRIRNCCTEPNYSAKEGISDRQTFEAAERPLTCIDATVAEMGASLTRKKRSRKKSALSSPADSSTNEMQQHHNFGLGSYQLPLGTSLGIAHGVIWETMHYIDALAERFRQLTMNREATDIASHEQNALVAYKHQNIVADGTIIPFQGPFDPIKKHRRPKVDLDEETDRVWKLLMIDINSHGIDGTNEDKAKWWEEERNVFRGRADSFIARMHLVQGDRRFSRWKGSVVDSVVGVFLTQNVSDHLSSSAFMSLAARFPQKSSSTCKTYNGEGTSLIVKEPQVHMVEPEENTEWDVKTLNQPVYDQSSMTIDMVEHSGEKEAVNSSDSGRTASSVTSLMDESNGRLSESSQRKTEEREEKSCYEGVRTNEIVSSQSFVISSQVSGYLLSDQNPEKIGSCSDSNSEVEDLSSTTKDNSIHNCIPHEYTLKLTPDSGGLEASCFDPFRTEASSSGFLKNKDKNDNRPCFQRSESASQVVSQEQSNHTQQSFFNISGQTEDLMQKERQLDLCDHKDAVRNEINEVSSTPKKLKSTGQRQVKNDDFNWDSLRIKAQAKAGKREKTENTMDSLDWDAVRRADVSEISNVIKERGMNNRLAERIKNFLNRLVEDHGDIDLEWLRDVAPDQAKEYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEQRSIVSTSENNVTDQNPSVIINQLHLPPPENASQGAEIQQTEVSRQLELKSELEICQPIIEEPTTPEPECSQVSQIDMEDAFIEDSCEIPTIKLNMEEFTLNLQNYIQESMELQEGEISKALVALNPEVASIPTPKLKNVSRLRTEHCVYELPDTHPLLEGWERREPDDPGKYLLAIWTPGETANSIQPPESKCSSQECGQLCNEKECFSCNSFREANSQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFAEHDSSLNPISVPRSWIWNLNRRTVYFGTSMPTIFKGLSTQEIQQCFWRGYVCVRGFDRATRAPRPLMARLHFPASKLPRTKDPASKLPKTKENSRRKKSTAAKSQGPEPNPGQAELLIAAKSQVPEPNPEHPELLIAAKSQGQEPNPEHPKLLTVQEPNPDHPELLSHGHNVQ*	1196

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod07g0198	1195	MobiDBLite	consensus disorder prediction	359	376	-	-
	Dod07g0198	1195	CDD	ENDO3c	582	700	IPR003265	GO:0006284
	Dod07g0198	1195	Pfam	RRM in Demeter	994	1094	IPR028925	-
	Dod07g0198	1195	MobiDBLite	consensus disorder prediction	59	84	-	-
	Dod07g0198	1195	MobiDBLite	consensus disorder prediction	337	358	-	-
	Dod07g0198	1195	Gene3D	-	657	772	IPR023170	-
	Dod07g0198	1195	SMART	endo3end	562	734	IPR003265	GO:0006284
	Dod07g0198	1195	SMART	ccc3	735	755	IPR003651	GO:0051539
	Dod07g0198	1195	MobiDBLite	consensus disorder prediction	332	376	-	-
	Dod07g0198	1195	Pfam	Permuted single zf-CXXC unit	960	991	IPR028924	-
	Dod07g0198	1195	MobiDBLite	consensus disorder prediction	1104	1124	-	-
	Dod07g0198	1195	SUPERFAMILY	DNA-glycosylase	217	757	IPR011257	GO:0003824\|GO:0006281
	Dod07g0198	1195	Gene3D	Hypothetical protein; domain 2	556	656	-	-
	Dod07g0198	1195	MobiDBLite	consensus disorder prediction	1092	1195	-	-
	Dod07g0198	1195	PANTHER	TRANSCRIPTIONAL ACTIVATOR DEMETER	9	1115	IPR044811	GO:0019104\|GO:0035514\|GO:0080111

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod07g0198	Dod-Chr7	2531294	2538559	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod07g0198	-		-	aprc:113870890	1634.39

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod07g0198	07	2531294	2538559	Dod07g0198	07	2531294	2538559	ECH
	Dod01g2828	01	68503859	68510961	Dod07g0198	07	2531294	2538559	PCT