Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2828 ATGCAGTTTGTCCTAATGCTTTTAGCCATTGATGCAGATGTAGCTTGGGAAGAGACATGGGAAAACAGGCATACTGCAGATGCACTGACACAGCAATTTAGACACCTAAACATAAATAGAGGAACCAGAGAGCTTGTATTGCATGGGCAGAATGCACTTGTCCCTTACAATCAGCAAAATCAAAAGCACAAAGGCCTTGCCAATGGTTGTGGCACCATCATTCCCTATGAGGGCTCATTTGATCCCATTAAAAAACAGCGCCCACGACCTAAAGTTGACCTTGATGAGGAGACTACTAGAGTATGGAAGCTTCTGATGTTAGATATAAACAGTCATGGGATTGATGGAATGGACGAAGACAAGGCCAAATGGTGGGAAGAAGAACGAAATGTGTTTCGTGGAAGAGCTGACTCATTTATTGCACGCATGCATCTGGTACAAGGAGACAGACGCTTTTCTCAATGGAAGGGATCAGTTGTGGATTCAGTGATTGGAGTTTTCCTCACACAAAATGTCTCAGACCATCTTTCCAGTTCTGCATTCATGTCTCTGGCTGCTCGATTTCCCCTAAAGTCAAGCAGCAAGTACAAAACATACCATGAGGAAAGCACAGGCTTGATACTCAGCAAACCACAAGTGTACATTATGGAACCAGAAGAGAGCACAAAATTGGATCAAAAAATATTGAACCCATCTGTTGATGACTTGAGTTCTATGACAACTGACGTCATTGAACATTCTGAAGAAAAAGAAGCCATCGACAGCAATGATTCCAGCAGAACCAGTGGGAGCTTAGCTAACTTAACAGATGAATCAAACTTTAAACTGCCAGAATCAACACAAAGATATATGAAGGAACAGCATAGTCCAATGGAGAGTGGACCAATAAGTGCCATTACAGGGGAAGGGCAGGAAAATTCATGTGATGGGGGTGCTAGGAAAGAATTAAATGACATGGTATCATCCCAGTGCTCAGTCATTACATCTCAAATACATGCAGATTTTTCAGTTGATCAAATTCCTGAGAAGATACATTCGTGCTCAGAAAGCAACTCAGAAGTAGAAGACCTGTCAAGTGCAGCCAAGTACAACATTTTTTATGACAGAACTTCTTTCAGTAAGCTTTTAGAAATGGCAAGTTCAACAACATTACATGAAGTCAACAGTCGAAGAAGCAAATCAACTGAGAACTCAAAAGATGTATATGGTCAGCCTATAGGAATGAAGCATGGCAACCAGACAGAAAACTTGGAAAAGTTGGATGTTACCCAAGACTGCTTAGAAGCATCCATCATCTCATGTGATGAATATCCTTTGAAAATGATCCCCAACACAGGAGTATCTGAAGTTAACTGCTATGATCCTTTCAAAATAGAAGGCTCATCAAGTGGCTTCTCAAAGAATAAAGATGAAAATGACATTAAGAGACCTAGTTTTCCAACAACAGAGTCTGAAACCCAAGCTGCAATTGCCCATTCTCAAAGTATGCCATCCCAATGTCATCTTCAGCAACAAAGTAATCATGGGCAGCAACATGCTTTGCACCTTTCAGGACAAATGCAAGATCTTATGCAGAAAGCAAGGGAACTAGATTTTGGTGACCAGCACAATGCCATCAATGAAAACAGTCAAATAAAGTCTGCCTCAACAAAATTAAAGAGCAGGGAGCGACAAAAGGAGAAAAAGGATAACTTTGATTGGGATAGTTTAAGAATAGAAGCACAAACTAAGGCAGGGAAAAGAGAAAAGACTGAAAACACCATGGACTCTTTGGACTGGGATGCTGTCAGGTGTGCAGATGTCCGTGAGATTGCTGATGCAATCAAAGAAAGGGGCATGAACAACATGCTTGCCGAACGTATTAAGAATTTCCTAAATCTATTGGTTGACAAACATGGGGCCATTGATCTTGAGTGGCTAAGAGATGTTCCGCCAGACCGAGCAAAAGAATACTTGCTCAGCATCAGGGGACTGGGATTGAAAAGTGTGGAGTGTGTGCGACTTTTAACACTGCACCATCTTGCTTTCCCGGTGGACACAAATGTTGGACGTATAGCAGTACGTTTGGGATGGGTACCTCTCCAGCCACTGCCCGAGTCACTACAGCTGCATCTTCTAGAATTGTACCCCGTGTTGGAATCCATACAAAAATATCTCTGGCCCCGACTGTGCAAGCTAGACCAAAGAACACTATATGAGCTACACTATCAGCTGATTACATTTGGAAAGGTCTTCTGTACAAAACACAAACCAAACTGTAATGCATGCCCAATGAGAGGGGAATGTAGACACTTCGCGAGTGCTTTTGCAAGTGCAAGGCTTGCCCTACCAGGACCAGAGCAGAGAAGTATAGTAACAACGAATGGAGAGAATGCAACTGATCAGAATCCATCAGTAATCATCAACCAGTTGCCCTTGCCTCTACCAGCAAACACAAACCGAGCAGAAGAACTTCAACAAACAGAAGTGAGCAAGCAACTTGAAGCAAAATCTGAAATCAATATTTGCCAACCAATTATTGAAGAGCCAGCAACTCCAGAGCCAGAATGCTCACAATTATTAGAAAATGACATGGAGGATGCCTTCTGTGAGGAATCGGGTGAAATTCCACCCATCCCAATAGACGTGGAAGAGCTCACTCTGAATGTACAAAATTTTATGGAAGAAAACATGGAACTTCAAGAAGGTGAAATGTCAAAGGCCTTGGTCACCCTCACTCCTGAAGCTGCCTGCATTCCTACACCGAAGCTGAAGAATGTCAACCGATTGCGAACAGAACATTGGGTTTATGAACTCCCAGATTCCCATCACCTTTTGGAAGGGTGGGACAAGCGGGAACCTGATGACCCAGGAAAATACCTTCTAGCTATATGGACCCCAGGTGAGACAGCAGATTCTACAAGGCCACCAGAAAGCAAATGCAGCTCTCAGGGCTGTGGCCAGCTCTGTAATGAGGAGGAATGTTTTTCATGCAACAGTTCCCGTGAAGCAAATTCCCAAGTGGTTCGAGGGACAGTCCTGATACCTTGCCGAACAGCTATGAGAGGGAGCTTTCCGTTAAATGGCACCTACTTTCAAGTCAATGAGGTATTTGCTGATGATGAAACAAGTCTTAACCCTATTCATGTTCCCCGAAGTTGGATCTGGAACCTCAGGAGGAGAACGGTATATTTTGGAACCTCCATACCAACCATTTTTAAAGGTTTAACAACACAAGAAATTCAACGATGCTTTTGGAGAGGATATGTCTGCGTGCGGGGATTCGACAGGGAGACAAGGGCACCACGCCCTCTTAAGGCCAGACTTCACTACCCAGCTAGCAAGTTGGCCAAGAAAGAGTCTGCTCCTGCAAGGCCACAAGAACTGAACCTGAATCTGCAACCAACTCCAGAACAGCCAGAGCTTCTTCCCAACATTCCCATTCCCAACAATGAGGAGAGGCAAGGAGCATGA 3453 0.4359 MQFVLMLLAIDADVAWEETWENRHTADALTQQFRHLNINRGTRELVLHGQNALVPYNQQNQKHKGLANGCGTIIPYEGSFDPIKKQRPRPKVDLDEETTRVWKLLMLDINSHGIDGMDEDKAKWWEEERNVFRGRADSFIARMHLVQGDRRFSQWKGSVVDSVIGVFLTQNVSDHLSSSAFMSLAARFPLKSSSKYKTYHEESTGLILSKPQVYIMEPEESTKLDQKILNPSVDDLSSMTTDVIEHSEEKEAIDSNDSSRTSGSLANLTDESNFKLPESTQRYMKEQHSPMESGPISAITGEGQENSCDGGARKELNDMVSSQCSVITSQIHADFSVDQIPEKIHSCSESNSEVEDLSSAAKYNIFYDRTSFSKLLEMASSTTLHEVNSRRSKSTENSKDVYGQPIGMKHGNQTENLEKLDVTQDCLEASIISCDEYPLKMIPNTGVSEVNCYDPFKIEGSSSGFSKNKDENDIKRPSFPTTESETQAAIAHSQSMPSQCHLQQQSNHGQQHALHLSGQMQDLMQKARELDFGDQHNAINENSQIKSASTKLKSRERQKEKKDNFDWDSLRIEAQTKAGKREKTENTMDSLDWDAVRCADVREIADAIKERGMNNMLAERIKNFLNLLVDKHGAIDLEWLRDVPPDRAKEYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKHKPNCNACPMRGECRHFASAFASARLALPGPEQRSIVTTNGENATDQNPSVIINQLPLPLPANTNRAEELQQTEVSKQLEAKSEINICQPIIEEPATPEPECSQLLENDMEDAFCEESGEIPPIPIDVEELTLNVQNFMEENMELQEGEMSKALVTLTPEAACIPTPKLKNVNRLRTEHWVYELPDSHHLLEGWDKREPDDPGKYLLAIWTPGETADSTRPPESKCSSQGCGQLCNEEECFSCNSSREANSQVVRGTVLIPCRTAMRGSFPLNGTYFQVNEVFADDETSLNPIHVPRSWIWNLRRRTVYFGTSIPTIFKGLTTQEIQRCFWRGYVCVRGFDRETRAPRPLKARLHYPASKLAKKESAPARPQELNLNLQPTPEQPELLPNIPIPNNEERQGA* 1151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2828 1150 MobiDBLite consensus disorder prediction 1108 1150 - -
Dod01g2828 1150 Pfam RRM in Demeter 1004 1104 IPR028925 -
Dod01g2828 1150 PANTHER ROS1, PUTATIVE-RELATED 16 497 - -
Dod01g2828 1150 MobiDBLite consensus disorder prediction 536 563 - -
Dod01g2828 1150 MobiDBLite consensus disorder prediction 247 276 - -
Dod01g2828 1150 Pfam Permuted single zf-CXXC unit 970 1001 IPR028924 -
Dod01g2828 1150 SUPERFAMILY DNA-glycosylase 134 767 IPR011257 GO:0003824|GO:0006281
Dod01g2828 1150 SMART endo3end 572 744 IPR003265 GO:0006284
Dod01g2828 1150 Gene3D - 674 762 IPR023170 -
Dod01g2828 1150 MobiDBLite consensus disorder prediction 461 514 - -
Dod01g2828 1150 CDD ENDO3c 592 710 IPR003265 GO:0006284
Dod01g2828 1150 MobiDBLite consensus disorder prediction 479 514 - -
Dod01g2828 1150 MobiDBLite consensus disorder prediction 387 410 - -
Dod01g2828 1150 PANTHER ROS1, PUTATIVE-RELATED 538 1113 - -
Dod01g2828 1150 Coils Coil 876 896 - -
Dod01g2828 1150 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 538 1113 IPR044811 GO:0019104|GO:0035514|GO:0080111
Dod01g2828 1150 SMART ccc3 745 765 IPR003651 GO:0051539
Dod01g2828 1150 MobiDBLite consensus disorder prediction 464 478 - -
Dod01g2828 1150 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 16 497 IPR044811 GO:0019104|GO:0035514|GO:0080111
Dod01g2828 1150 Gene3D Hypothetical protein; domain 2 570 673 - -
Dod01g2828 1150 MobiDBLite consensus disorder prediction 257 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2828 Dod-Chr1 68503859 68510961 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2828 - - adu:107493869 1709.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2828 01 68503859 68510961 Dod07g0198 07 2531294 2538559 PCT