Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2521 ATGAGCAGGCCAGGAGATTGGAACTGCAGGTCATGCCAGCACCTGAACTTTCAGAGAAGAGATTCTTGCCAACGATGTGGGGACTCAAAATATGGAGACAGGATGGATTTTGGGGCTTTTGGAGGAAGAGGAGGGTCTTCATTTGGGTTGAGTGGTTCAGATGTTCGCCCTGGTGACTGGTATTGTGCTGCTGCTAACTGTGGTGCACACAACTTTGCTAGCCGCTCAAGCTGCTTCAAGTGTGGTGCTTTCAAGGATGACTTAGCTGGAGGATTTAACAGTGACTTCTCACGGGCAAGAGGCTTCGGCGGCGGCGGCGGCGGTAGCGGCGGAAGACCTGGATGGAAATCTGGTGATTGGATATGCAGCAGATCAGGATGCAATGAGCACAACTTTGCTAGCAGAATGGAATGTTTTAAATGCAGTGCACCGAGGGACACTTACTAG 447 0.5101 MSRPGDWNCRSCQHLNFQRRDSCQRCGDSKYGDRMDFGAFGGRGGSSFGLSGSDVRPGDWYCAAANCGAHNFASRSSCFKCGAFKDDLAGGFNSDFSRARGFGGGGGGSGGRPGWKSGDWICSRSGCNEHNFASRMECFKCSAPRDTY* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2521 148 SUPERFAMILY Ran binding protein zinc finger-like 2 33 IPR036443 -
Dod06g2521 148 PANTHER ZINC FINGER PROTEIN 1 147 - -
Dod06g2521 148 Pfam Zn-finger in Ran binding protein and others 3 28 IPR001876 -
Dod06g2521 148 Pfam Zn-finger in Ran binding protein and others 56 83 IPR001876 -
Dod06g2521 148 Pfam Zn-finger in Ran binding protein and others 116 145 IPR001876 -
Dod06g2521 148 ProSiteProfiles Zinc finger RanBP2 type profile. 3 32 IPR001876 -
Dod06g2521 148 ProSitePatterns Zinc finger RanBP2-type signature. 60 81 IPR001876 -
Dod06g2521 148 Gene3D - 112 147 - -
Dod06g2521 148 Gene3D - 2 32 - -
Dod06g2521 148 Gene3D - 51 87 - -
Dod06g2521 148 ProSitePatterns Zinc finger RanBP2-type signature. 120 141 IPR001876 -
Dod06g2521 148 ProSiteProfiles Zinc finger RanBP2 type profile. 56 87 IPR001876 -
Dod06g2521 148 PANTHER OS02G0203700 PROTEIN 1 147 - -
Dod06g2521 148 SUPERFAMILY Ran binding protein zinc finger-like 50 86 IPR036443 -
Dod06g2521 148 ProSiteProfiles Zinc finger RanBP2 type profile. 116 147 IPR001876 -
Dod06g2521 148 SMART zf_4 5 29 IPR001876 -
Dod06g2521 148 SMART zf_4 118 144 IPR001876 -
Dod06g2521 148 SMART zf_4 58 84 IPR001876 -
Dod06g2521 148 ProSitePatterns Zinc finger RanBP2-type signature. 7 26 IPR001876 -
Dod06g2521 148 SUPERFAMILY Ran binding protein zinc finger-like 108 146 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2521 Dod-Chr6 54252404 54254311 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2521 - - gmx:100499847 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g2521 06 54252404 54254311 Dod06g2521 06 54252404 54254311 ECH
Dod10g2076 10 42698785 42700166 Dod06g2521 06 54252404 54254311 PCT