Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1966 ATGCTCAGCATGAGGCATTCTCATTTTACGCCACTAGCATTCTCCATATTTGTCCTTACTTTATTTCTTTCCACCCAAGCTAGACACCATTACCATACAAAACACAAACACTCGCACTCTCATAAATCATCTGGAATTTCACTACCTCCTGCTCCAACGCCTGCACCTTCTGATGAACCTGATGAAGCTCCTAGCCCCGCCGGTAACGAGGATCACTACAATGCATCTGAATTTTTCAATGTAAGAACGTTTGGGGCCATTGGAGATGGTATAACTGATGATACAGAGTCATTCAAGATGACGTGGGACAGTGCTTGCCAAAGTGATTCAGCAATTAATGTTATCATTGTTCCTGGTGGCTTCTCCTTCATCATTCAGTCTACCATCTTCACAGGACCTTGTCAAGGTGGCATGGTATTAAAGGTTGATGGCACACTAATGCCACCGGATGGGCCTGATTCTTGGGCAAAGAACATCAGTAGGCGTCAGTGGCTGGTCTTCTATAGGATCAATGGGATGTCACTGGAAGGAAGTGGCGTAATAGACGGGAGAGGAGAAAAATGGTGGGACCTTCCTTGCAAACCTCATAAGGGACCTAATGGCACCACATTACATGGACCTTGTGATAGTCCAATTGCCTTAAGATTTTTCATGAGTTCCAACTTGACTGTGCAAGGGCTTAGGATCAAGAACAGCCCCCAGTTCCATTTCAGATTTGATGGCTGCAAAAGCGTCCATGTAGAATCAATCTACATAACAGCTCCAGCACTGAGCCCCAACACTGATGGAATACACATAGAAAATACCAATGACGTCAAAATATACAATTCTGTCATTTCTAATGGAGACGACTGTGTGTCCATTGGTTCGGGTTGCTATGATGTTGATATAAAAAACATCACATGTGGACCCAGTCATGGGATTAGCATTGGTAGTCTGGGAAATCACAACTCGCGAGCCTGTGTTACAAACATTACGGTGAGAGACTCAGTTATAAAAGTGTCAGATAATGGAGTTAGAATAAAGACATGGCAAGGTGGATCAGGATCAGTATCAAGGGTGACATTCAGTAACATTCACATGGATAGTGTGAGGAATCCCATCATAATTGACCAGTTCTACTGCCTGAGCAAGGATTGCAGCAACAAGACCTCTGCAGTCTTTGTATCAGACATACTTTACTCAAGCATAAAGGGAACTTATGATATAAGGCGCCCACCTATGCGTTTTGCCTGCAGTGACTCTGTCCCGTGCATTAACTTGACACTCGCAGATATTGAGCTTCTTCCTGCTCAAGGAGATATGGTGCATGATCCTTTTTGTTGGAATGCTTATGGAAATTTGGAGACACTAACCATTCCTCCAGTTTCTTGCTTGCTAGAGGGCACCCCTCAGTCCATTCCAGGCAATGATATTGATCATTGCTGA 1428 0.4398 MLSMRHSHFTPLAFSIFVLTLFLSTQARHHYHTKHKHSHSHKSSGISLPPAPTPAPSDEPDEAPSPAGNEDHYNASEFFNVRTFGAIGDGITDDTESFKMTWDSACQSDSAINVIIVPGGFSFIIQSTIFTGPCQGGMVLKVDGTLMPPDGPDSWAKNISRRQWLVFYRINGMSLEGSGVIDGRGEKWWDLPCKPHKGPNGTTLHGPCDSPIALRFFMSSNLTVQGLRIKNSPQFHFRFDGCKSVHVESIYITAPALSPNTDGIHIENTNDVKIYNSVISNGDDCVSIGSGCYDVDIKNITCGPSHGISIGSLGNHNSRACVTNITVRDSVIKVSDNGVRIKTWQGGSGSVSRVTFSNIHMDSVRNPIIIDQFYCLSKDCSNKTSAVFVSDILYSSIKGTYDIRRPPMRFACSDSVPCINLTLADIELLPAQGDMVHDPFCWNAYGNLETLTIPPVSCLLEGTPQSIPGNDIDHC* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1966 475 Gene3D - 65 461 IPR012334 -
Dod06g1966 475 MobiDBLite consensus disorder prediction 33 72 - -
Dod06g1966 475 ProSitePatterns Polygalacturonase active site. 299 312 IPR000743 GO:0004650|GO:0005975
Dod06g1966 475 SUPERFAMILY Pectin lyase-like 75 464 IPR011050 -
Dod06g1966 475 PANTHER - 9 465 - -
Dod06g1966 475 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 9 465 - -
Dod06g1966 475 SMART pbh1 292 312 IPR006626 -
Dod06g1966 475 SMART pbh1 269 290 IPR006626 -
Dod06g1966 475 SMART pbh1 351 372 IPR006626 -
Dod06g1966 475 SMART pbh1 242 268 IPR006626 -
Dod06g1966 475 SMART pbh1 322 343 IPR006626 -
Dod06g1966 475 Pfam Glycosyl hydrolases family 28 110 428 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1966 Dod-Chr6 29479897 29481996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1966 78 475 Glycoside Hydrolase AT1G02460 73.067 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1966 - - gmx:100792285 798.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3201 01 72916398 72919192 Dod06g1966 06 29479897 29481996 ECH
Dod06g1966 06 29479897 29481996 Dod06g1966 06 29479897 29481996 ECH
Dod01g3201 01 72916398 72919192 Dod06g1966 06 29479897 29481996 PCT