Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3201 ATGTTCAGAATGAAGCGTTCTCATATTTTACCATTAGCATTCTGTGTATTTTTTCTCACATTATTTGTTTCCATCCAAGCTAGCCATCATCATTCCCATACAAAACACAAGCACTCACATTCTCATAAATCATCTAAAACTGCTCCACAGCCTGCACCTCCTAGTCCTCCTGGTGATGCTCCTGGCCCCCCTCATAACAGCACTTTTGATGTAAGAAAATTTGGGGCCATAGGAGATGGAATAGCAGATGATACAGAGTCATTCAAGATGGCATGGGACACTGCCTGCCAAAGTGAATCAGCAGTTAATGTTATGCTTGTTCCCCAAGGCTTCTCCTTCATCATTCAGTCTACTATTTTCACAGGTCCTTGTCAAGGTGGCATAGTATTGAAGGTGGATGGCACTCTCATGCCACCAGATGGACCTGAGTCTTGGCCAAAGAACAACAGCAGGCGCCAATGGCTGGTCTTCTATAGAATCAATGGAATGTCACTGGATGGAAGTGGTGTAATAGATGGGAGAGGAGAAAAATGGTGGGACCTTCCCTGTAAGCCTCACAAGGGACCAAATGGGACAACATTGCCAGGACGTTGTGACAGCCCAATTGCCATAAGGTTTTTCATGAGTACCAACTTGATTGTGCAAGGACTTAGGATCAAGAACAGCCCACAGTTCCATTTCAGATTTGATGGCTGCAGAAACGTCCATATAGAATCTGTCTACATAACAGCTCCAAAACTAAGCCCCAATACTGATGGAATTCACATTGAAAATACCAATGATGTGAAAATATATAATTCTGCGATTTCTTGTGGTGATGACTGTGTGTCCATTGGATCCGGTTGCTATGATGTTGATATAAAGAACATTACATGTGGTCCTGGTCACGGAATCAGCATTGGTAGTCTGGGAATTCACAACTCTCGGGCCTGTGTTTCAAACATTACGGTGAGAGACTCAGTATTAAAGGTGACAGATAATGGAGTCAGGATCAAGACATGGCAAGGTGGATCAGGATCTGTGTCAGGAGTAACATTCAGTAATATTCACATGGATAGTGTCAGAAACCCGATCATAATTGACCAGTTCTACTGCCTCTATATGAACTGCACCAACAAGACTTCTGCAGTGTTTGTATCAGATATTGTTTACACTAGCATCAGGGGCACGTATGACATAAGGAGCCCTCCTATGCGTTTTGCTTGCAGTGACACTGTCCCGTGCACCAACTTAACCCTCTCAGATATTGAGCTTCTTCCCTCTCAAGGATATATAGTGCATGATCCTTTCTGTTGGAATGCTTATGGAGATTTGCAAACATTAACCATTCCACCAGTGTCTTGCTTGCTGAAGGGCACTCCTTAG 1365 0.4352 MFRMKRSHILPLAFCVFFLTLFVSIQASHHHSHTKHKHSHSHKSSKTAPQPAPPSPPGDAPGPPHNSTFDVRKFGAIGDGIADDTESFKMAWDTACQSESAVNVMLVPQGFSFIIQSTIFTGPCQGGIVLKVDGTLMPPDGPESWPKNNSRRQWLVFYRINGMSLDGSGVIDGRGEKWWDLPCKPHKGPNGTTLPGRCDSPIAIRFFMSTNLIVQGLRIKNSPQFHFRFDGCRNVHIESVYITAPKLSPNTDGIHIENTNDVKIYNSAISCGDDCVSIGSGCYDVDIKNITCGPGHGISIGSLGIHNSRACVSNITVRDSVLKVTDNGVRIKTWQGGSGSVSGVTFSNIHMDSVRNPIIIDQFYCLYMNCTNKTSAVFVSDIVYTSIRGTYDIRSPPMRFACSDTVPCTNLTLSDIELLPSQGYIVHDPFCWNAYGDLQTLTIPPVSCLLKGTP* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3201 454 Gene3D - 60 447 IPR012334 -
Dod01g3201 454 SMART pbh1 259 280 IPR006626 -
Dod01g3201 454 SMART pbh1 341 362 IPR006626 -
Dod01g3201 454 SMART pbh1 312 333 IPR006626 -
Dod01g3201 454 SMART pbh1 232 258 IPR006626 -
Dod01g3201 454 SMART pbh1 282 302 IPR006626 -
Dod01g3201 454 Pfam Glycosyl hydrolases family 28 96 418 IPR000743 GO:0004650|GO:0005975
Dod01g3201 454 SUPERFAMILY Pectin lyase-like 64 450 IPR011050 -
Dod01g3201 454 MobiDBLite consensus disorder prediction 49 63 - -
Dod01g3201 454 ProSitePatterns Polygalacturonase active site. 289 302 IPR000743 GO:0004650|GO:0005975
Dod01g3201 454 PANTHER - 9 451 - -
Dod01g3201 454 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 9 451 - -
Dod01g3201 454 MobiDBLite consensus disorder prediction 32 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3201 Dod-Chr1 72916398 72919192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3201 65 454 Glycoside Hydrolase AT1G02460 73.028 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3201 - - gmx:100778836 759.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3201 01 72916398 72919192 Dod01g3201 01 72916398 72919192 ECH
Dod01g3201 01 72916398 72919192 Dod06g1966 06 29479897 29481996 ECH
Dod01g3201 01 72916398 72919192 Dod06g1966 06 29479897 29481996 PCT