Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1943 ATGAAGAAACCTTCAACTCTGGTGGTTGTGTTTCTTCTACTTGCACTGTTCAGTTGCAACCTATGGACAGTGTTGAGCAGCTCACGCTGCAAACAGATAAATGTGGAGGAAGTTCGACCTCACAGTGTCCGTATTACCGAATTTGGAGCAGTTGGAGATGGAATCACTCTCAACACAAAAGCATTTCAGAATGCCATATTCTACCTAAATTCATTTGCAGACAAAGGTGGAGCCAAGCTTTTTGTCCCAGCTGGCCGGTGGTTAACTGGAAGTTTTGATCTCATCAGCCACCTAACTTTGTGGTTGGACGAGGATGCAGTGATTCTTGGATCAGTGAACTCTGATGATTGGCCAGTTGTGGATCCTCTACCATCGTATGGTCGTGGAAGGGAGTTGCCGGGTGGAAGGCATAAAAGCCTCATTAATGGTCGCAATTTGACTGATATCATCATAACAGGCAATAATGGAACTATAGATGGTCAAGGGAGTATCTGGTGGAGCAGGTTTCAGAACAAAACACTGGACTATACACGTCCCCATTTGGTTGAGTTGATGAATTCAAGTGGGGTTCTCATTTCAAATTTGAACTTCTTGAATTCACCATTTTGGAATATTCACCCTGTATATTGCAGCCATGTTACAGTTCAAAATGTCACAATCCTTGCTCCTCCTAGTTCACCAAACACAGATGGGATTGATCCAGACTCTTCAGACAATGTATGCATTGAAGATTGTTATATAAGCACTGGTGATGATTTGATTGCCATAAAAAGTGGGTGGGATGAATATGGCATTTCGTTTGGTCGTCCTAGTACAAACATTGTCATCCACAGGCTCATTGGGAAAACAACAAGTGCAGGCATTGCTATTGGAAGTGAGATGTCTGGCGGTGTGTCAGACATTTTTGCAGAGGATATCCACATTTTTGATTCACATACTGGAATTGGAATAAAGACTTCTCCTGGCAGGGGCAGTTATGTTAGAAATGTCTATATCTCAAAGATCACCTTGGCTAATGTAGATATTGCTATTAGGTTCAATGGTTTATATGGAGAACATCCAGATGATGCTTATAACCCAGATGCTCTACCTGTAATAGAAAGGATTACTATCAAGGATATGGTTGGGGAAAATGTCAAACGTGCCGGCCTTATACAGGGTATAAAAGGTGACAACTTTGTCAACATCTGCTTATCAAACATCACCCTTAGTGTGAGATCAAAACTTCCATGGAACTGCTCTTATGTTGAAGGATACTCCGACCTGGTTTCTCCGGAAGTTTGTGAGCCTCTCAAAGAGAGTATATTCCCTGAGCATGTTTCAGACTGTTACTATTTATCAAATCTGTTGAAGAGTTCAAGCAATCAGAACCGGGGTGCTTGGTTGCTATCTTGGTAA 1398 0.4199 MKKPSTLVVVFLLLALFSCNLWTVLSSSRCKQINVEEVRPHSVRITEFGAVGDGITLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDEDAVILGSVNSDDWPVVDPLPSYGRGRELPGGRHKSLINGRNLTDIIITGNNGTIDGQGSIWWSRFQNKTLDYTRPHLVELMNSSGVLISNLNFLNSPFWNIHPVYCSHVTVQNVTILAPPSSPNTDGIDPDSSDNVCIEDCYISTGDDLIAIKSGWDEYGISFGRPSTNIVIHRLIGKTTSAGIAIGSEMSGGVSDIFAEDIHIFDSHTGIGIKTSPGRGSYVRNVYISKITLANVDIAIRFNGLYGEHPDDAYNPDALPVIERITIKDMVGENVKRAGLIQGIKGDNFVNICLSNITLSVRSKLPWNCSYVEGYSDLVSPEVCEPLKESIFPEHVSDCYYLSNLLKSSSNQNRGAWLLSW* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1943 465 PANTHER OS07G0245200 PROTEIN 8 448 - -
Dod06g1943 465 PANTHER PECTIN LYASE-RELATED 8 448 - -
Dod06g1943 465 Gene3D - 20 417 IPR012334 -
Dod06g1943 465 SMART pbh1 298 319 IPR006626 -
Dod06g1943 465 SMART pbh1 237 269 IPR006626 -
Dod06g1943 465 SMART pbh1 327 348 IPR006626 -
Dod06g1943 465 SMART pbh1 271 292 IPR006626 -
Dod06g1943 465 SMART pbh1 210 236 IPR006626 -
Dod06g1943 465 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Dod06g1943 465 SUPERFAMILY Pectin lyase-like 37 430 IPR011050 -
Dod06g1943 465 Pfam Glycosyl hydrolases family 28 138 417 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1943 Dod-Chr6 28835733 28840091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1943 1 465 Glycoside Hydrolase AT3G62110 67.019 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1943 - - gmx:100786985 803.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g1943 06 28835733 28840091 Dod06g1943 06 28835733 28840091 ECH
Dod01g3225 01 73178774 73182836 Dod06g1943 06 28835733 28840091 PCT