Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3225 ATGAGGAGACCTTCTACACTTGTGGATGTGCTTCTGGTGCTTGCATTATTCAGCTGTGGCCCATGGATAGTGTGGAGCAGCTCACTATGCAAACAGACAAACTTGGAGGTTCGACCTCACAGTGTCAGTATTACCGAATTTGGTGCAGTGGGAGATGGGGTCACTCTCAACACAAAAGCATTCCAGAATGCCATCTTCTACCTAAATTCATTTGCAGACAAAGGTGGAGCAAAGCTTTTCGTACCAGCTGGCCAGTGGTTAACTGGTAGTTTTGATCTCATCAGCCATCTAACTCTCTGGCTGGACAAGGATGCAGTAATTCTTGGATCAACGAACTCTGAAGATTGGCCAGTTGTTGATCCTTTACCATCATATGGGCGAGGAAGGGAGTTGCCGGGTGGAAGGCACAGGAGCCTCATTTTTGGACGCAATTTGACTGATGTCATTATAACAGGAAATAATGGAACTATTGATGGTCAAGGGAGTGTCTGGTGGAGCAAGTTTAGGAACAAAACCCTGGATTACACGCGTCCCCATTTGGTAGAATTGATGAATTCAACAGGGGTTCTCATTTCGAATTTAACCTTCTTGAATTCTCCATTTTGGACTATTCATCCTGTATATTGCAGCCAAGTTACAGTTAAGAATGTCAAGATCCTTGCTCCTCTTGATTCGCCAAACACGGATGGGATTGATCCAGACTCTTCTGACGATGTATGCATTGAAGACTGTTATATAAGCACCGGTGATGATCTGATTGCCATCAAAAGCGGGTGGGATGAGTATGGCATTGCATTTGGTCGTCCCAGCACAAACATTATCATCCACAGGCTCACCGGGAAAACCGAAACGAGTGCAGGGATTGCTATTGGAAGTGAGATGTCCGGCGGTGTATCGAAAGTTCACGCACAAGACATTCGCTTCTTCGATTCATACACTGCAATCAGAGTAAAGACTTCTCCCGGGAGGGGTGGTTATGTTAGAGACATCTATATCTCTAACGTGACCTTGGATAATGTCGACATTGCTATTAGGTTCACTGGTTCATATGGGGATCATCCTGATGATGGTTATGACCCAAATGCTCTACCTGTAATAGAAAAGATCACAATAAAGGATGTACTTGGAGGAAATATCAAACGTGCAGGTCTTATAGAGGGCATAGAAGGTGACAACTTTGTCAACATCTGCCTATCAAACATCATCCTTAATGTGAGCTCAAGCTATCCATGGAACTGCTCTTATGTCAAAGGATACTCCGACTGGGTTTGGCCAGAAGCTTGTCAGCCTCTCAAGGAGAGAATATTCCCTGAGCATTGTTCGGACTGTTACAATCTGTCGGATCAGCAACGAAGTTCCAATAACCAAAACAGAGGACAAATTTCAGGTGACATAAGAAGTTGA 1404 0.4437 MRRPSTLVDVLLVLALFSCGPWIVWSSSLCKQTNLEVRPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSTNSEDWPVVDPLPSYGRGRELPGGRHRSLIFGRNLTDVIITGNNGTIDGQGSVWWSKFRNKTLDYTRPHLVELMNSTGVLISNLTFLNSPFWTIHPVYCSQVTVKNVKILAPLDSPNTDGIDPDSSDDVCIEDCYISTGDDLIAIKSGWDEYGIAFGRPSTNIIIHRLTGKTETSAGIAIGSEMSGGVSKVHAQDIRFFDSYTAIRVKTSPGRGGYVRDIYISNVTLDNVDIAIRFTGSYGDHPDDGYDPNALPVIEKITIKDVLGGNIKRAGLIEGIEGDNFVNICLSNIILNVSSSYPWNCSYVKGYSDWVWPEACQPLKERIFPEHCSDCYNLSDQQRSSNNQNRGQISGDIRS* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3225 467 Pfam Glycosyl hydrolases family 28 136 417 IPR000743 GO:0004650|GO:0005975
Dod01g3225 467 Gene3D - 27 418 IPR012334 -
Dod01g3225 467 PANTHER OS07G0245200 PROTEIN 7 451 - -
Dod01g3225 467 PANTHER PECTIN LYASE-RELATED 7 451 - -
Dod01g3225 467 SUPERFAMILY Pectin lyase-like 35 431 IPR011050 -
Dod01g3225 467 SMART pbh1 327 348 IPR006626 -
Dod01g3225 467 SMART pbh1 209 235 IPR006626 -
Dod01g3225 467 SMART pbh1 236 268 IPR006626 -
Dod01g3225 467 SMART pbh1 270 292 IPR006626 -
Dod01g3225 467 SMART pbh1 298 319 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3225 Dod-Chr1 73178774 73182836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3225 1 450 Glycoside Hydrolase AT3G62110 71.116 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3225 - - gmx:100782602 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3225 01 73178774 73182836 Dod06g1943 06 28835733 28840091 PCT