Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1888 ATGGGGCACAAGTATTTGTGGTTGGCTTTCTGTTTGTGGGCTTTAATATGTTCACTTCTTCCTTCTTCATCATGTGGACTTATGCGAGTTGGTTTGAAGAAGAGATCTTTAGATCTTGAAAGTATCAAAGCTGCTAGAATGGCAAGAGAAAAGCTAAGATTAGGCAGGCCAATGGTGGGTGCAAATGATCAGTTTGTTGGTAAGCCAAGTGATGGTGATGATATATTACCTTTGAAGAATTACTTGGATGCACAATATTATGGAGAGATTGGAATTGGCACACCCCCACAAACATTCAATGTCATATTTGATACTGGTAGTTCCAACCTCTGGGTTCCTTCATCAAAGTGCTACTTTTCTCTTGCCTGCTATACCCATCATTGGTACAAGTCAAAGAAATCCGAAACATATGTGAAAAACGGAACGTCATGTAAAATAACATATGGATCTGGAGCAATATCTGGATTTTTCAGTAAAGATAATGTTAAAGTTGGTGAAGTTGTGGTCAAGAATCAAGATTTCATCGAGGCTACCAGAGAAGGAAGTCTTTCCTTTGTGTTAGCGAAGTTTGATGGATTACTTGGGCTTGGGTTTCAGGAGATCTCAATTGAAGATGCTGTGCCAGTATGGTATAATATGGTGGAGCAGAATCTTGTAAGTGAGCAGGTTTTCTCATTTTGGCTCAATGGGGATCCAAAAGCTGAAGATGGTGGTGAGCTAGTTTTTGGTGGCGTTGATCCAAAGCACTTCAAAGGACATCATACTTATGTTCCAGTTACCAAAAAAGGTTACTGGCAGATTGAAATGGGAGATTTTTTCATTGGAGGTGCCTCAACAGGTGTTTGCGAGGGTGGCTGTGCTGCTATTGTGGATTCAGGAACATCTTTGCTTGCTGGTCCAACTACTGTTGTGACTGAAATCAACCATGCTATTGGAGCTGAAGGAGTTCTGAGTGTAGAATGCAAGGAAGTTGTTTCTGAATATGGAGAGCTGATATGGGATCTCCTGGTCTCGGGGGTGCAACCTGGTCAGGTATGTTCACAAGTTGGTTTATGCTCTGCCAAGAGGGATCAATCTAAAAGCCTTGGGATTGAGATGGTGACTGAAAAGGAACAGAGAGAGTTGTCGGCTAAGGATAGTGCTTTGTGCTCTTCCTGTGAGATGCTTGTGATTTGGGTCCAGAATCAACTAAGGCAAGAGTCAACCAAGGAACGAGTTTTCCAATATGTGGATCAGCTGTGTGAGAGCTTGCCGAGTCCAAATGGAGAGTCTGTAGTAAACTGTGACAGCATTTCTCTGTTGCCGAACATTACGTTTACTATTGGAAAGAAATCTTTCCACCTCACTCCAGAGCAGTATATTTTGAAAACTGGACAAGGCATTGCTGAAGTCTGCCTTAGTGGGTTTATTGCTTTCGACATTCCTCCTCCACGGGGTCCTCTCTGGATTCTTGGTGATATTTTCATGAGGCCATATCACACCGTCTTTGACTACGGGAATCTCCGAGTGGGGTTTGCTGAAGCTGCCTAA 1530 0.4275 MGHKYLWLAFCLWALICSLLPSSSCGLMRVGLKKRSLDLESIKAARMAREKLRLGRPMVGANDQFVGKPSDGDDILPLKNYLDAQYYGEIGIGTPPQTFNVIFDTGSSNLWVPSSKCYFSLACYTHHWYKSKKSETYVKNGTSCKITYGSGAISGFFSKDNVKVGEVVVKNQDFIEATREGSLSFVLAKFDGLLGLGFQEISIEDAVPVWYNMVEQNLVSEQVFSFWLNGDPKAEDGGELVFGGVDPKHFKGHHTYVPVTKKGYWQIEMGDFFIGGASTGVCEGGCAAIVDSGTSLLAGPTTVVTEINHAIGAEGVLSVECKEVVSEYGELIWDLLVSGVQPGQVCSQVGLCSAKRDQSKSLGIEMVTEKEQRELSAKDSALCSSCEMLVIWVQNQLRQESTKERVFQYVDQLCESLPSPNGESVVNCDSISLLPNITFTIGKKSFHLTPEQYILKTGQGIAEVCLSGFIAFDIPPPRGPLWILGDIFMRPYHTVFDYGNLRVGFAEAA* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1888 509 Pfam Saposin-like type B, region 2 320 352 IPR008138 -
Dod06g1888 509 Gene3D Acid Proteases 245 509 IPR021109 -
Dod06g1888 509 ProSiteProfiles Peptidase family A1 domain profile. 86 506 IPR033121 -
Dod06g1888 509 PRINTS Pepsin (A1) aspartic protease family signature 238 251 IPR001461 GO:0004190|GO:0006508
Dod06g1888 509 PRINTS Pepsin (A1) aspartic protease family signature 482 497 IPR001461 GO:0004190|GO:0006508
Dod06g1888 509 PRINTS Pepsin (A1) aspartic protease family signature 288 299 IPR001461 GO:0004190|GO:0006508
Dod06g1888 509 PRINTS Pepsin (A1) aspartic protease family signature 92 112 IPR001461 GO:0004190|GO:0006508
Dod06g1888 509 CDD phytepsin 76 507 IPR033869 GO:0004190
Dod06g1888 509 SUPERFAMILY Saposin 317 418 IPR011001 -
Dod06g1888 509 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 288 299 IPR001969 GO:0004190|GO:0006508
Dod06g1888 509 Gene3D - 316 418 - -
Dod06g1888 509 ProSiteProfiles Saposin B type domain profile. 316 356 IPR008139 -
Dod06g1888 509 Pfam Eukaryotic aspartyl protease 85 508 IPR033121 -
Dod06g1888 509 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 5 509 IPR001461 GO:0004190|GO:0006508
Dod06g1888 509 SMART sapb_4 280 352 IPR008139 -
Dod06g1888 509 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 101 112 IPR001969 GO:0004190|GO:0006508
Dod06g1888 509 SUPERFAMILY Acid proteases 7 508 IPR021109 -
Dod06g1888 509 Pfam Saposin-like type B, region 1 382 418 IPR007856 GO:0006629
Dod06g1888 509 ProSiteProfiles Saposin B type domain profile. 379 420 IPR008139 -
Dod06g1888 509 PANTHER FUNGAL PROTEINASE A, ASPARTIC PROTEINASE SUPERFAMILY PROTEIN 5 509 - -
Dod06g1888 509 Gene3D Acid Proteases 28 244 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1888 Dod-Chr6 27400011 27406278 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1888 K08245 - gmx:547993 912.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g1888 06 27400011 27406278 Dod06g1888 06 27400011 27406278 ECH
Dod01g3268 01 73715531 73722566 Dod06g1888 06 27400011 27406278 PCT