Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3268 ATGAACTGCTGGTTTTATCGTGTGCTTGACCTTCTGAGTTGCGACTTCAATCCAACAAAAAGGTTTGATCTTTCTTTTGGTTTTAATCATTTGATCATTCATCGTAGTGACTCACTTCAACCCGTCTGCTTTACTTTCTTCTATCCACAAACACGACATATCTTTCCTCTAAATTCTACCAGATTTGACTTGTCCTCTTACTTGCTTTGTTTGATCTTCCAACATAAATTTTCCCTTACTATGGGACACAAGCATTTGGCAGTGGCTTTCTGTTTGTGGGCTTTAACATGCACGCTTCTTCCTTCTTTCTCATATGGACTTCTGAGAATTGGTTTGAAGAAGAGACCTCTTGATCTTCAAAGTATTAATGCTGCTAAGAAGGCCAGAGAAGGCCTAAGGTCAGCTAGACCAATGATGGGTGCACATGAGCAGTATAGTGTTGGGTCAAGTGGTGAAGATATAGTAGCTTTGAAGAATTATATGGATGCTCAATATTTTGGTGAGATTGGAATTGGCACACCCGCACAGCCATTCACTGTAATATTTGATACTGGTAGCTCCAACCTTTGGGTTCCTTCATCAAAGTGCTATTTTTCTCTTGCTTGCTATACCCATAATTGGTACAAGCCAAAGAAATCTAAAACATATACCAAAAACGGAACATCATGTAAAATAACCTATGGATCTGGATCAATATCTGGTTTCTTCAGTCAAGATCATGTTACGGTTGGTGATGTTGTTGTCAAGGATCAGGATTTCATTGAGGCTACCCGAGAAGGAAGTCTTACCTTTCTGGCAGCAAAGTTTGATGGTATACTTGGGCTTGGGTTTCAGGAGATATCAGTTGAAAGAGCCGTGCCAGTATGGTACAAAATGGTGGAACAAAATCTTGTGAGTGAGAAGGTGTTCTCTTTCTGGCTCAATGGGGATCCAAAGGCCAAAAAGGGTGGTGAACTAGTTTTTGGTGGTGTTGATCCAAAGCACTTCAAAGGAGAACATACTTATGTTCCAGTCAGCTCAAAAGGTTACTGGCAGATTGAAATGGGAGATTTTTATATTGGAGGTGTTTCAACAGGTGTTTGTGAGGGTGGCTGCGCTGCTATTGTGGATTCAGGAACATCTTTGCTTGCTGGTCCAACTACTGTTGTTGCTGAAATCAACCATGCTATTGGCGCTGAAGGAGTTCTGAGTGTAGAATGTAAGGAAGTTGTGTCTCAATATGGAGAGAAGATATGGGATCTCTTAGTATCAGGGGTACAACCTGGTGAAATATGTTCACAAGTTGGGTTATGTACTTCCAAAAGTATTGGGATTGAGATGGTGACTGAAAAGGAACAGGGAGAGTTGTCAGCTAGAGATTCTACTTTGTGTTCTTCTTGTCAGATGCTTGTGATTTGGATCCAGAATCAACTAAAACAAAAGAAAACAAAGGAAAGAGTATTCAACTACGTGAATCAACTTTGCGAGAGCTTGCCGAGCCCATCGGGAGAGTCAGTGATAAGCTGTGATAGTCTTTCTCAGATGCCAAACATTACCTTCACTATTGGAGATAAACCTTATGTCCTTGCACCAGAGCAGTATATTTTGAGAACTGGAGAAGGCATTACTGAGGTCTGCATCAGTGGGTTTATTGCTATTGATGTTCCTCCTCCACGGGGTCCACTCTGGATTCTTGGCGATGCTTTCATGAGGGTCTATCACACAGTCTTTGATTACGGGAACCTCCAACTTGGTTTTGCTGAAGCTGCCTAA 1752 0.415 MNCWFYRVLDLLSCDFNPTKRFDLSFGFNHLIIHRSDSLQPVCFTFFYPQTRHIFPLNSTRFDLSSYLLCLIFQHKFSLTMGHKHLAVAFCLWALTCTLLPSFSYGLLRIGLKKRPLDLQSINAAKKAREGLRSARPMMGAHEQYSVGSSGEDIVALKNYMDAQYFGEIGIGTPAQPFTVIFDTGSSNLWVPSSKCYFSLACYTHNWYKPKKSKTYTKNGTSCKITYGSGSISGFFSQDHVTVGDVVVKDQDFIEATREGSLTFLAAKFDGILGLGFQEISVERAVPVWYKMVEQNLVSEKVFSFWLNGDPKAKKGGELVFGGVDPKHFKGEHTYVPVSSKGYWQIEMGDFYIGGVSTGVCEGGCAAIVDSGTSLLAGPTTVVAEINHAIGAEGVLSVECKEVVSQYGEKIWDLLVSGVQPGEICSQVGLCTSKSIGIEMVTEKEQGELSARDSTLCSSCQMLVIWIQNQLKQKKTKERVFNYVNQLCESLPSPSGESVISCDSLSQMPNITFTIGDKPYVLAPEQYILRTGEGITEVCISGFIAIDVPPPRGPLWILGDAFMRVYHTVFDYGNLQLGFAEAA* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3268 583 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 180 191 IPR001969 GO:0004190|GO:0006508
Dod01g3268 583 Pfam Saposin-like type B, region 1 456 492 IPR007856 GO:0006629
Dod01g3268 583 Gene3D Acid Proteases 108 323 IPR021109 -
Dod01g3268 583 SMART sapb_4 359 431 IPR008139 -
Dod01g3268 583 Gene3D - 395 492 - -
Dod01g3268 583 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 83 583 IPR001461 GO:0004190|GO:0006508
Dod01g3268 583 CDD phytepsin 155 581 IPR033869 GO:0004190
Dod01g3268 583 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 367 378 IPR001969 GO:0004190|GO:0006508
Dod01g3268 583 PANTHER FUNGAL PROTEINASE A, ASPARTIC PROTEINASE SUPERFAMILY PROTEIN 83 583 - -
Dod01g3268 583 ProSiteProfiles Saposin B type domain profile. 453 494 IPR008139 -
Dod01g3268 583 ProSiteProfiles Saposin B type domain profile. 395 435 IPR008139 -
Dod01g3268 583 Gene3D Acid Proteases 324 583 IPR021109 -
Dod01g3268 583 SUPERFAMILY Saposin 396 492 IPR011001 -
Dod01g3268 583 SUPERFAMILY Acid proteases 95 582 IPR021109 -
Dod01g3268 583 Pfam Eukaryotic aspartyl protease 164 582 IPR033121 -
Dod01g3268 583 Pfam Saposin-like type B, region 2 399 431 IPR008138 -
Dod01g3268 583 PRINTS Pepsin (A1) aspartic protease family signature 317 330 IPR001461 GO:0004190|GO:0006508
Dod01g3268 583 PRINTS Pepsin (A1) aspartic protease family signature 367 378 IPR001461 GO:0004190|GO:0006508
Dod01g3268 583 PRINTS Pepsin (A1) aspartic protease family signature 171 191 IPR001461 GO:0004190|GO:0006508
Dod01g3268 583 PRINTS Pepsin (A1) aspartic protease family signature 556 571 IPR001461 GO:0004190|GO:0006508
Dod01g3268 583 ProSiteProfiles Peptidase family A1 domain profile. 165 580 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3268 Dod-Chr1 73715531 73722566 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3268 K08245 - gmx:548009 901.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3268 01 73715531 73722566 Dod01g3268 01 73715531 73722566 ECH
Dod01g3268 01 73715531 73722566 Dod06g1888 06 27400011 27406278 PCT