Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1876 ATGCTAATTATTCTGTGTTATGGTTTCCCAGTCATCCTTGACTCAGCCTCAGATGTTGGTAGTCTCAGACCTGGCCGACATCTTTGCCCATTGCCAGATCATCTCCTTGTCAACTTATTAGAATCAAGAAGTGTGGTGGAAGCCTTTCTTGATAGTTTGCCATCCATGTTCCAAGACAATGTGAATTTGGAATCTGCTTTTGATCCTGCCGGTAAGGCTGCATTTATGGTTATGAGTCAACTTGGAGGAAAATTGTTAATTTTTCAAAACACACTCCCATCTCTTGGTGTCGCTCGCTTGAAATTACGTGGTGATGATTCTCGCACATTGCCAGAAGATCCATTTTACAAGCACATGGCTGCTGAGTTTTCTAAACAGCAGATCTCTGTGAATGTATATGCATTCAGTGATAAGTACACTGACATAGCCTCCTTAGGTGTACGTTTCACAACTTATCATGGAAACTTTATGCTAAGTTCCACTGATTTGTTGGCACTTCCTGCTGCAGACTGTGATAAAGCCTTTGCCATGCAATTATCTCTTGAAGAAACATCATTGACAACTCAGACAATCTATTTTCAAGTTGCGTTGCTATATACTGCATCTTGTGGAGAAAGGCGTATCAGAGTACACACAGCAGCAGTTCCAGTAGTCACAGACTTGGGAGAGATGTATCGCCTGGCTGAGACTGGTGCAATTGTATCTCTGATTAGTAGGCTAGCAATTGAGAAAACATTGTCCCACAAACTGGAAGAAGCAAGGAGTGCTGTGCAACTAAGAATTGTGAAATGCCTGAGAGAGTATCGAAATCTCTATGCTGTGCAACATCGGTTGATCAACACCTCTACGTGGAGTGGAGGGTACGGGGATGTTCCTTTGGATGAGCAGTGTGCAGCTGGACACATGATGATGATTCTTCCGATAAAAAGGCTGTTGAAACTTCTCTATCCAAGTTTAATTCGACTTTATGAACATCTTCTGAAGGCTGATGACTTGAAAAGCATTGATAGAAAGTTACCTTTAACTCGGGAGAGCTTGGATTCTATGGGCCTATATATATATATGATGATGGCTTCCGGTTCATTTTTTGGTTTGGTTACTCTTAATGACAATGGTAGTGAAATGTCGAGGAGGCTGATGAAGGTACTTGAGAAATTCCGAAATACTGACTGTCCGTATTACCAGTTGTGCTACCTTGAGAGGCAAGGTGAGCAGCCCAAAGAAGGATTCCTTCTTCTTGCAAACCTTTTTGAGGACCAGATGGGTGGGAATAGTGGGTATGCTGATTGGATACTACAGATTTCCAGACAAGTGCAGCAGTGA 1323 0.424 MLIILCYGFPVILDSASDVGSLRPGRHLCPLPDHLLVNLLESRSVVEAFLDSLPSMFQDNVNLESAFDPAGKAAFMVMSQLGGKLLIFQNTLPSLGVARLKLRGDDSRTLPEDPFYKHMAAEFSKQQISVNVYAFSDKYTDIASLGVRFTTYHGNFMLSSTDLLALPAADCDKAFAMQLSLEETSLTTQTIYFQVALLYTASCGERRIRVHTAAVPVVTDLGEMYRLAETGAIVSLISRLAIEKTLSHKLEEARSAVQLRIVKCLREYRNLYAVQHRLINTSTWSGGYGDVPLDEQCAAGHMMMILPIKRLLKLLYPSLIRLYEHLLKADDLKSIDRKLPLTRESLDSMGLYIYMMMASGSFFGLVTLNDNGSEMSRRLMKVLEKFRNTDCPYYQLCYLERQGEQPKEGFLLLANLFEDQMGGNSGYADWILQISRQVQQ* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1876 440 Pfam Sec23/Sec24 beta-sandwich domain 143 218 IPR012990 -
Dod06g1876 440 PANTHER SEC24-RELATED PROTEIN 29 146 - -
Dod06g1876 440 PANTHER SEC24-RELATED PROTEIN 366 440 - -
Dod06g1876 440 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 319 440 IPR036180 -
Dod06g1876 440 Gene3D Severin 317 354 IPR029006 -
Dod06g1876 440 Pfam Sec23/Sec24 trunk domain 28 151 IPR006896 GO:0006886|GO:0006888|GO:0030127
Dod06g1876 440 PANTHER SEC24-RELATED PROTEIN 146 354 - -
Dod06g1876 440 SUPERFAMILY beta-sandwich domain of Sec23/24 145 227 - -
Dod06g1876 440 SUPERFAMILY vWA-like 26 155 IPR036465 -
Dod06g1876 440 Gene3D von Willebrand factor, type A domain 29 145 IPR036465 -
Dod06g1876 440 Gene3D Sec23/Sec24 helical domain 218 316 - -
Dod06g1876 440 PANTHER SEC23/SEC24 PROTEIN TRANSPORT FAMILY PROTEIN-RELATED 29 146 - -
Dod06g1876 440 PANTHER SEC23/SEC24 PROTEIN TRANSPORT FAMILY PROTEIN-RELATED 146 354 - -
Dod06g1876 440 Gene3D - 146 217 - -
Dod06g1876 440 PANTHER SEC23/SEC24 PROTEIN TRANSPORT FAMILY PROTEIN-RELATED 366 440 - -
Dod06g1876 440 SUPERFAMILY Helical domain of Sec23/24 230 316 IPR036175 GO:0006886|GO:0006888|GO:0030127
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1876 Dod-Chr6 27135997 27141065 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1876 K14007 - gmx:100791083 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3279 01 73819969 73828742 Dod06g1876 06 27135997 27141065 PCT