Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3279 ATGGGGACTGAAAATCCTGGTCGTCCGAGCTTCCCTGCAAGACCTGCTGCTGCTTCACCTTTTGCTGCTGCACCGCCACAGACTGTCACCCCTTTTTCATCAACCGGCCCTGTCGCCGGATCAGAGGTTCCTCCTTTCCGGCCTACAGCTCCACCTCCACCTCCCCAGGCACCCACGCCGTTCTCATCATCTGGACCTCCAGTTAGGCCAGGGGTTCCCAGTTTTAGACCTGCACCACCAACAGGCAGGTTCAATGACCCGTCAGTGCCCCCTCCTCCCCCTCCAACAACCAATGTCCCGCCACCTGGTGCACTTTTCCAGCGTTTTCCATCGCCACAGTTTTCCCCAGCAACTCAAGGCCCTCCACAGCCGCGTGGACCACCCATGGGCCAACCATCAATCCAGCAATCCACCAGTCAAGTGCCATCTTTCCCTGCTTCTGGTCCGCCTCAGCCACAGACGCCTTTTGTTCAAATGGGGTCTCCCCCGATGAGTGCCACTCCTCCGCCTTTTGGTTCAAATGTTCCTCCTGCCACCTATCAGCCGCCGTCTTTTCCTGGATATGCCCGTATGCAGCCTGGTAGTGAAATGCAAGCTCCCCCTGTCCATTCCTCTCTCCCTCCTAATCAAGGAAATTATGGACCTGTCCCACCTTTTCAAGGAGGCTATGCTCCACAGCCTCCAATGGCTGCTCCACTAGGTATGCAGCCGATGCAGCAGCCAGGATCTGGACCCCCTATTGGTGCCATTCAGGGCTTGGCAGAAGACTTCAATTCACTCACAATGCAAACACGTCCTGGAACGATGGATGCATTATTTGATGCTAAAGAACTTCCCAGGCCTTTGGAGGGTGATGTGGAGCCTAAGAATTTGGCTGATGTATATCCTATGAATTGTGAGCCGAGATATCTAAGACTCACAACCAATGCAGTCCCTAGCTCCCAGTCCTTAGCTTCAAGGTGGCATCTGCCTCTTGGAGCAGTTGTATGTCCTCTTGCAGAACCTCCTGATGGGGAAGAGTTGCCTGTAGTTAATTTTGCTCCTGCTAGTGTTGTTCGCTGTAGAAGATGCCGCACATATGTGAATCCATATATGACATTTACAGAAGCTGGAAGAAAGTTCCGCTGCAATGTCTGCACATTGCTTAATGATGTTCCTAGCGAATATTATGCGCAATTAGATGCCACTGGCAGAAGAGTTGATTTGGATCAACGACCTGAGCTTACAAAGGGTACTGTAGAATTTGTTGCCCCTGCTGAGTATATGGTGCGGCCTCCTATGCCCCCAGTATATTTCTTCCTCATTGATGTTTCCATATCTGCTGTTAGAAGTGGAATGATTGAGGTTGTTGCCAAAACAATCAAGTCATGCTTAGATGAGCTGCCAGGCTTTCCCCGAACACAGATAGGATTTGCAACTTTTGACAGCACTATACATTTTTATAACATGAAGTCATCCCTGACTCAGCCACAGATGTTGGTAGTCTCAGATCTGGACGACATATTTGTTCCACTGCCAGATGATCTTCTAGTTAACTTATCTGAATCAAGAAGTGTGGTTGAAACCTTCCTAGATAGTTTACCATCCATGTTCCAGGACAATGTTAATGTGGAATCAGCTTTTGGTCCTGCTCTCAAGGCTGCGTTTATGGTTATGAGTCAACTTGGAGGGAAATTGTTAATCTTTCAAAATACACTCCCATCTCTTGGTATTGGCCGATTGAAATTACGTGGAGATGATTCTCGTGTTTATGGGACAGATAAAGAACATGGATTGAGATTGCCGGAAGATCCATTTTATAAGCAAATGGCTGCTGAGTTTTCTAAATACCAAATCTCAGCAAACGTGTATGCATTCAGCGATAAGTACACTGACATAGCCTCCTTGGGAACTCTGGCAAAGTATACTGCTGGTCAAGTTTATTACTATCCAGCTTTTCAATCAGCCATTCATGGGGAGAAATTGAGACATGAGTTAAGGAGAGACCTTACCCGAGAAACTGCATGGGAAGCTGTAATGCGTATTAGATGTGCAAAAGGTGTTCGCTTCACAAACTATCATGGAAACTTTATGCTAAGGTCCACTGATTTGTTAGCACTTCCAGCTGTTGATTGTGATAAAGCTTTTGCCATGCAGCTGTCTCTTGAGGAGACATTATTGACAACTCAGACAATGTATTTTCAAGTTGCATTGCTATATACTGCATCTTGTGGAGAAAGGCGTATCAGAGTACACACAATGGCAGTTCCAGTAGTTACAGACTTGGGAGAGATGTATCGCTTGGCTGATACTGGTGCAATTGTATCCCTGTTTAGTAGGCTAGCAATTGAGAAAACGCAATCCCAAAAACTAGAAGATGCACGAAGTGCTGTGCAATTAAGAATTGTGAAAGCCCTCAAGGAATATCGAAATCTTTATGCCGTGCAACATCGCTTGCTCAACAGAATGATATATCCTGAGTCTTTAAAGTTCCTGTCATTGTATGGATTAGCTCTTTGTAGATCAATGGCTCTCCGTGGAGGGTATGGTGATGTTCCGCTGGATGAACGATGTGCAGCAGGACACACAATGATGATTCTACCAATAAAAAGACTGTTGAAACTTCTCTATCCTAGCTTGATTCGACTTGATGAATATCTCCTGAAGGCATCTGTACAGGCCAATGATCTGAAAAATATTGAGAGAAGGCTACCCTTGACAGTGGAGAGCTTGGATTCTAGGGGCCTTTATATATATGATGATGGCTTCCGGTTCATTATATGGTTTGGCAGGGTGATTTCCCCTGATATAGCTAAAAATTTACTTGGGGCAGACTTTGCAGCAGAACTATCAAAGGCTACTCTCAGTGACCATGATAATGAAATGTCGAGGAGGCTGATAAGAGTGCTTGAGAAATTCAGAAATACTGATCGTGCATGCTACCAGTTGTGCCACCTTGTGAGGCAAGGTGAACAGCCCAGAGAAGGATTCCTTCTTCTTACAAACCTTATTGAGGACCAGATGGGGGGTAATAGTGGGTATGCTGATTGGATGCTACAGATATCCAGACAAGTGCAGCAATAA 3063 0.4626 MGTENPGRPSFPARPAAASPFAAAPPQTVTPFSSTGPVAGSEVPPFRPTAPPPPPQAPTPFSSSGPPVRPGVPSFRPAPPTGRFNDPSVPPPPPPTTNVPPPGALFQRFPSPQFSPATQGPPQPRGPPMGQPSIQQSTSQVPSFPASGPPQPQTPFVQMGSPPMSATPPPFGSNVPPATYQPPSFPGYARMQPGSEMQAPPVHSSLPPNQGNYGPVPPFQGGYAPQPPMAAPLGMQPMQQPGSGPPIGAIQGLAEDFNSLTMQTRPGTMDALFDAKELPRPLEGDVEPKNLADVYPMNCEPRYLRLTTNAVPSSQSLASRWHLPLGAVVCPLAEPPDGEELPVVNFAPASVVRCRRCRTYVNPYMTFTEAGRKFRCNVCTLLNDVPSEYYAQLDATGRRVDLDQRPELTKGTVEFVAPAEYMVRPPMPPVYFFLIDVSISAVRSGMIEVVAKTIKSCLDELPGFPRTQIGFATFDSTIHFYNMKSSLTQPQMLVVSDLDDIFVPLPDDLLVNLSESRSVVETFLDSLPSMFQDNVNVESAFGPALKAAFMVMSQLGGKLLIFQNTLPSLGIGRLKLRGDDSRVYGTDKEHGLRLPEDPFYKQMAAEFSKYQISANVYAFSDKYTDIASLGTLAKYTAGQVYYYPAFQSAIHGEKLRHELRRDLTRETAWEAVMRIRCAKGVRFTNYHGNFMLRSTDLLALPAVDCDKAFAMQLSLEETLLTTQTMYFQVALLYTASCGERRIRVHTMAVPVVTDLGEMYRLADTGAIVSLFSRLAIEKTQSQKLEDARSAVQLRIVKALKEYRNLYAVQHRLLNRMIYPESLKFLSLYGLALCRSMALRGGYGDVPLDERCAAGHTMMILPIKRLLKLLYPSLIRLDEYLLKASVQANDLKNIERRLPLTVESLDSRGLYIYDDGFRFIIWFGRVISPDIAKNLLGADFAAELSKATLSDHDNEMSRRLIRVLEKFRNTDRACYQLCHLVRQGEQPREGFLLLTNLIEDQMGGNSGYADWMLQISRQVQQ* 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3279 1020 PANTHER SEC24-RELATED PROTEIN 30 1020 - -
Dod01g3279 1020 SUPERFAMILY beta-sandwich domain of Sec23/24 92 761 - -
Dod01g3279 1020 MobiDBLite consensus disorder prediction 44 77 - -
Dod01g3279 1020 Pfam Sec23/Sec24 trunk domain 426 662 IPR006896 GO:0006886|GO:0006888|GO:0030127
Dod01g3279 1020 Gene3D - 299 751 - -
Dod01g3279 1020 Gene3D - 297 410 - -
Dod01g3279 1020 MobiDBLite consensus disorder prediction 1 220 - -
Dod01g3279 1020 CDD Sec24-like 426 667 IPR041742 GO:0006886|GO:0006888|GO:0030127
Dod01g3279 1020 Gene3D von Willebrand factor, type A domain 428 665 IPR036465 -
Dod01g3279 1020 MobiDBLite consensus disorder prediction 83 107 - -
Dod01g3279 1020 MobiDBLite consensus disorder prediction 115 129 - -
Dod01g3279 1020 Pfam Sec23/Sec24 helical domain 763 866 IPR006900 GO:0006886|GO:0006888|GO:0030127
Dod01g3279 1020 Gene3D Sec23/Sec24 helical domain 752 1018 - -
Dod01g3279 1020 SUPERFAMILY vWA-like 426 665 IPR036465 -
Dod01g3279 1020 Gene3D Severin 871 999 IPR029006 -
Dod01g3279 1020 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 881 1020 IPR036180 -
Dod01g3279 1020 Pfam Sec23/Sec24 beta-sandwich domain 668 752 IPR012990 -
Dod01g3279 1020 Pfam Sec23/Sec24 zinc finger 352 389 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Dod01g3279 1020 SUPERFAMILY Zn-finger domain of Sec23/24 342 425 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Dod01g3279 1020 MobiDBLite consensus disorder prediction 130 144 - -
Dod01g3279 1020 Pfam Gelsolin repeat 896 950 IPR007123 -
Dod01g3279 1020 MobiDBLite consensus disorder prediction 145 183 - -
Dod01g3279 1020 PANTHER OS04G0129500 PROTEIN 30 1020 - -
Dod01g3279 1020 SUPERFAMILY Helical domain of Sec23/24 763 870 IPR036175 GO:0006886|GO:0006888|GO:0030127
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3279 Dod-Chr1 73819969 73828742 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3279 K14007 - gmx:100791083 1673.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3279 01 73819969 73828742 Dod06g1876 06 27135997 27141065 PCT