LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod06g1492	ATGTCTCGAATCTTATTCTCCACATGGAGCAAGAACAAGACCAAGCTTCACCTCAACCCAACAACAATACCCACTCTTCCTTCTTCTTCTTCTTCTTCTTCTTCAACAAACACCCACTTCACCCATTACCATCACTACCATCATCATCATCATCATCATCATCGTCACAACCTAACCACCACAACAACTTTCTTCTACCACCACCGCCGCCGCCGCCACTCCTTCCTCGGCGGCGGCGTCCAGCACCGCCACAAGTCGGGCCATGGAGCCTCCGACGGCTCGAATTACCGACCCCGAAGGATCCGGACCGAGCTGTATTGCCCACGATGCTCCACGGACAACGCAATGGTCAATCTCCCAAGTGCTCCACTTCACGGTGGAGAAGAAGGAGTAGGGCACCATCATGGTGCGAACCTTTGCCCCAATTGCAACACTGCTTATCACTTTAGCCCTTACAGGGTTCCGCAACTCCAAGGTTCCTTTTTGGAGATTGGGGTTGAAAGGGTCACTGGTGATGATTATGTTGATGACAAGGTTCCGAGGAGATTCAATGGTTATGGCAGAGTTCCATTGTGGGAGTCTTTGAGATCATATGGTAGTAATGGTGGTGGTGGTGGTGGTGATGGGGAGCCACCAGTGGATTGGCCTAATGCACCTGATGGGAATGGTGTTGCTGTGCATACTCCTCCAGGGCCACCTTTTGCTCCTGGGGTTAATGTTATTCGGGCTTCTGGGCCCCGAGAAGGCGGTTCCGGGGGTGGTGGCGGTGAGAAGACTTCATGGGGAGGTTCTAATTTGGGGAGGGATTTGCCAACTCCAAAGGAAATTTGTATGGGTCTTGACAAGTTTGTTATTGGCCAAGATAGGGCGAAAAAGGTTCTATCTGTAGCTGTTTATAACCACTATAAAAGAATATACCATGCCTCCTTACAGAAAGGGTCAGGAGCAGATTCAGGAATTTCAGAAGCATTAGATGATGCTGATCATGTAGAACTGGAAAAAAGTAATGTTCTCTTGATGGGTCCAACAGGGTCAGGGAAGACATTACTTGCAAAAACCCTAGCTCGATTTGTGAATGTCCCATTTGTCATTGCTGATGCAACAACCTTGACACAGGCAAAGGAAATGTTCTTGCAGGCTGGATATGTTGGAGAAGATGTTGAATCAATATTGTATAAACTACTTGCGGCAGCAGAGTTCAATGTTCAAGCAGCTCAACAAGGGATTGTTTACATTGATGAAGTGGACAAGATAACTAAGAAGGCTGAGAGCATAAATATAAGCCGAGATGTTTCTGGCGAGGGTGTTCAGCAGGCATTATTAAAAATGCTGGAAGGAACAATAGTAAATGTTCCTGAGAAAGGAGCAAGGAAACATCCACGGGGTGATAACATACAGATCGACACAAAGAATATTCTTTTTATATGTGGGGGTGCATTTGTTGATCTTGAAAAAACCATTTCAGAGAGACGACACGATTCTTCCATTGGGTTTGGAGCACCAGTCCGTGCCAATATGAGAACTGGTCGAGTAACAAATGCAGCTGTAGCATCATCTTTACTTGAGTCGGTGGAAAGTTCTGATCTTATCGCGTATGGTCTCATACCAGAGTTTATTGGACGATTTCCAATCTTAATTAGCTTGTCAGCATTAACTGAAGACCAACTTATGCAGGTCCTCACAGAGCCGAAAAATGCTCTTGCTAAGCAGTACAAGAAACTATTTAGCATGAACAATGTAAAGCTACACTTCACAGAGAAAGCTCTGAGACTGATTGCAAAGAAAGCAATGGCCAAAAATACTGGTGCCAGGGGTTTAAGAGCCCTACTGGAAAGCATTTTAACTGAAGCTATGTTTGAGATTCCAGATGTTAAGGCAGGAAATGAACAGATTGATGCAGTTCTTGTTGACGAGGAATCGGTAGGATCAGTAAATGCCCCTGGTTGTGGAGGAAAAATTCTCCAAGGAGAAGGCGCTTTGGAGCGATACCTAGCTAAGATGGAGGAATCAGTGGTTAATGGTGATGTAGCTGAATCGGACTTACAAGATGGGGAACAGGAATCAAGAGCCATTGGCATGTAA	2082	0.4577	MSRILFSTWSKNKTKLHLNPTTIPTLPSSSSSSSSTNTHFTHYHHYHHHHHHHHRHNLTTTTTFFYHHRRRRHSFLGGGVQHRHKSGHGASDGSNYRPRRIRTELYCPRCSTDNAMVNLPSAPLHGGEEGVGHHHGANLCPNCNTAYHFSPYRVPQLQGSFLEIGVERVTGDDYVDDKVPRRFNGYGRVPLWESLRSYGSNGGGGGGDGEPPVDWPNAPDGNGVAVHTPPGPPFAPGVNVIRASGPREGGSGGGGGEKTSWGGSNLGRDLPTPKEICMGLDKFVIGQDRAKKVLSVAVYNHYKRIYHASLQKGSGADSGISEALDDADHVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAKEMFLQAGYVGEDVESILYKLLAAAEFNVQAAQQGIVYIDEVDKITKKAESINISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKNILFICGGAFVDLEKTISERRHDSSIGFGAPVRANMRTGRVTNAAVASSLLESVESSDLIAYGLIPEFIGRFPILISLSALTEDQLMQVLTEPKNALAKQYKKLFSMNNVKLHFTEKALRLIAKKAMAKNTGARGLRALLESILTEAMFEIPDVKAGNEQIDAVLVDEESVGSVNAPGCGGKILQGEGALERYLAKMEESVVNGDVAESDLQDGEQESRAIGM*	694

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod06g1492	693	CDD	AAA	334	499	-	-
	Dod06g1492	693	Gene3D	-	265	549	IPR027417	-
	Dod06g1492	693	PANTHER	OS01G0886600 PROTEIN	89	686	-	-
	Dod06g1492	693	SMART	AAA_5	333	502	IPR003593	-
	Dod06g1492	693	MobiDBLite	consensus disorder prediction	20	39	-	-
	Dod06g1492	693	Pfam	C-terminal, D2-small domain, of ClpB protein	551	620	IPR019489	-
	Dod06g1492	693	SMART	ClpB_D2_small_2	551	642	IPR019489	-
	Dod06g1492	693	PANTHER	ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED	89	686	-	-
	Dod06g1492	693	MobiDBLite	consensus disorder prediction	77	97	-	-
	Dod06g1492	693	MobiDBLite	consensus disorder prediction	243	268	-	-
	Dod06g1492	693	Pfam	AAA domain (Cdc48 subfamily)	333	544	IPR003959	GO:0005524\|GO:0016887
	Dod06g1492	693	Gene3D	-	550	651	-	-
	Dod06g1492	693	TIGRFAM	clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX	268	642	IPR004487	GO:0005524\|GO:0006457\|GO:0051082\|GO:0140662
	Dod06g1492	693	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	269	636	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod06g1492	Dod-Chr6	19998605	20005569	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod06g1492	K03544		-	gmx:100805340	850.506

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod06g1492	06	19998605	20005569	Dod06g1492	06	19998605	20005569	ECH
	Dod02g3183	02	66788491	66795143	Dod06g1492	06	19998605	20005569	PCT