Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0831 ATGTCTCACATCATGATGAACCAGCGTCCAGGACTCAACAATTCCTACGTGATTGGTGTGATCTGTGCAGTTCTGACATTGGGATCGTTTGGAGTTAGGGTTGCAGAATGCAGATTAGCCAGTAGTACTAGTAGTAGATTAGAGAACCTTGAATACTCTGCCATCAATTGTCGAAAGCACAGTGCAGTTTTGACAGATTTTGGTGGGGTTGGTGATGGCAATACCTCCAACACCAAGGCCTTTCAATCTGCAATAAGCAATCTCAGCCATTATTCATCTGATGGTGGTGCACAACTTGTTGTGCCACCTGGTAGATGGCTAACGGGAAGCTTCAATCTCACTAGCCATTTCACTCTTTTCCTCCACAAGGATGCCGTCATTCTTGCATCTCAGGATGAATCAGAATGGCCTTCACTTCCTCCTCTACCATCTTATGGAAAAGGAAGAGATGCTCCTGATGGAAGGTTTAGCAGTCTCATTTTTGGAACCAACCTCACTGATGTTGTAATCACCGGTTACAATGGGACAATTGATGGGCAAGGATCATTTTGGTGGGACAAGTTCCACAAGGGCGAATTGAAACTCACTAGGCCATACATGATTGAGATCATGTTCTCTGATCAAATCCAGATTTCAAATATCACTTTGATCAACTCCCCATCCTGGTTTGTCCATCCAATTTACAGCAGTAATGTAATAATCCAAGGGCTTACCATTCTTGCACCCGTTGACTCTCCCAACACAGATGGGATAGACCCAGATTCATGCAAAAACACTAAGATTGAAGACTGCTACATTGTCTCTGGTGATGATTGTATTGCAGTAAAAAGTGGCTGGGATGAGTATGGCATTAAATTTGGGATGCCAACCCAACACCTAATCATCAGAAGGCTTACCTGTGTATCCCCTTATAGTGCCATGATTGCTTTAGGCAGTGAAATGTCTGGTGGGATCCAAGATGTTAGAGCTGAAGACATCGTAGCTATCAATACTGAATCAGCTGTTAGAATCAAGACAGCAGTTGGTAGAGGTGGATATGTGAAAGACATATTTGTTAAGGGAATGAACTTGCACACCATGAAATATGTGTTTTGGATGACAGGTGCCTATGGATCACACCCTGACTCTGGATTTGATCCCGAAGCACTTCCTCAAATCACTAGGATAAATTATAGAGATGTCACTGGGGATAATGTCACATATTCAGCAAGGCTTGATGGAATTTCCAATGATCCTTTTACAGGAATATGCATTTCTAATGTGAATATTAGAGTGAGTGAAGAGAAGAAGAAACTTCAATGGAATTGCACTGATGTTTCTGGAGCTACAAGCAATGTGATTCCTCAGCCTTGTGACTTGCTGCCTGAGAAGGGAAAGAAATTTGACTGTCCTTTTCCAAATAACAAACTGCCCATTGAAAGTGTTCAGTTGAAGACTTGCTCTTTTTGA 1449 0.4231 MSHIMMNQRPGLNNSYVIGVICAVLTLGSFGVRVAECRLASSTSSRLENLEYSAINCRKHSAVLTDFGGVGDGNTSNTKAFQSAISNLSHYSSDGGAQLVVPPGRWLTGSFNLTSHFTLFLHKDAVILASQDESEWPSLPPLPSYGKGRDAPDGRFSSLIFGTNLTDVVITGYNGTIDGQGSFWWDKFHKGELKLTRPYMIEIMFSDQIQISNITLINSPSWFVHPIYSSNVIIQGLTILAPVDSPNTDGIDPDSCKNTKIEDCYIVSGDDCIAVKSGWDEYGIKFGMPTQHLIIRRLTCVSPYSAMIALGSEMSGGIQDVRAEDIVAINTESAVRIKTAVGRGGYVKDIFVKGMNLHTMKYVFWMTGAYGSHPDSGFDPEALPQITRINYRDVTGDNVTYSARLDGISNDPFTGICISNVNIRVSEEKKKLQWNCTDVSGATSNVIPQPCDLLPEKGKKFDCPFPNNKLPIESVQLKTCSF* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0831 482 SUPERFAMILY Pectin lyase-like 57 478 IPR011050 -
Dod06g0831 482 Gene3D - 43 447 IPR012334 -
Dod06g0831 482 Pfam Glycosyl hydrolases family 28 157 440 IPR000743 GO:0004650|GO:0005975
Dod06g0831 482 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 21 481 - -
Dod06g0831 482 PANTHER PECTIN LYASE-RELATED 21 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0831 Dod-Chr6 10333640 10336935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0831 41 480 Glycoside Hydrolase AT3G48950 71.171 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0831 - - gmx:100779166 811.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0831 06 10333640 10336935 Dod06g0831 06 10333640 10336935 ECH
Dod02g2990 02 63473829 63477231 Dod06g0831 06 10333640 10336935 PCT