Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2990 ATGAAGCTTTGTCCAAAACTCAGGAACTCCTATGTTGTTGGGATTATCTCCACAGTTTTGTTGTTGGTATCAGTGGGAGTGAGGGTATCAGAATGCAGATTGGTTAGTAGTGGATTGGAGGACCTTGAGTACTCTGCTATCAATTGCCGAAAACACAGTGCAGTTTTGACTGATTTTGGTGGCGTTGGTGATGGCAAAACATCCAACACCAAAGCCTTTCAATATGCAATTGGTAATCTGAGCCAGTATGCATCTGATGGGGGTGCAGTGCTAGTGGTGCCACCTGGGAAATGGCTGACAGGAAGCTTCAATCTCACTAGCCATTTCACTCTTTTTCTCCAAAGTGATGCTGTCATTCTTGCTTCTCAGGATGAATCAGAGTGGCCACCACTTCCTGTACTACCATCATATGGAAGGGGAAGAGATGCTCCTGATGGAAGGTTTAGTAGTCTCATTTTTGGAGCTAACCTCACTGATGTTGTAATTACTGGTTACAATGGGACAATTGATGGGCAAGGATCTTATTGGTGGGACAAGTTCCACAAGGGAGAGTTGAAACTCACCAGGCCATACATGATTGAGATAATGTTCTCTAATAACATCCAGATATCAAATCTCACTTTGATCAACTCCCCATCTTGGTTTGTCCATCCAATTTACAGCAGTGACATTATAATTCAAGGGCTGACCATTGCTGCACCAACTGACTCTCCCAACACAGATGGAATAGATCCTGATTCTTGTACCAACACTAGGATTGAAGACTGTAACATTGTCTCTGGTGACGATTGCATAGCAGTTAAAAGTGGTTGGGATGAGTCCATGCCAGGTTGA 834 0.4365 MKLCPKLRNSYVVGIISTVLLLVSVGVRVSECRLVSSGLEDLEYSAINCRKHSAVLTDFGGVGDGKTSNTKAFQYAIGNLSQYASDGGAVLVVPPGKWLTGSFNLTSHFTLFLQSDAVILASQDESEWPPLPVLPSYGRGRDAPDGRFSSLIFGANLTDVVITGYNGTIDGQGSYWWDKFHKGELKLTRPYMIEIMFSNNIQISNLTLINSPSWFVHPIYSSDIIIQGLTIAAPTDSPNTDGIDPDSCTNTRIEDCNIVSGDDCIAVKSGWDESMPG* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2990 277 PANTHER PECTIN LYASE-RELATED 16 273 - -
Dod02g2990 277 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 16 273 - -
Dod02g2990 277 Pfam Pectate lyase superfamily protein 57 115 IPR024535 -
Dod02g2990 277 Pfam Glycosyl hydrolases family 28 150 271 IPR000743 GO:0004650|GO:0005975
Dod02g2990 277 Gene3D - 50 276 IPR012334 -
Dod02g2990 277 SUPERFAMILY Pectin lyase-like 49 270 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2990 Dod-Chr2 63473829 63477231 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g2990 12 273 Glycoside Hydrolase AT3G61490 68.321 8.58e-134 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2990 - - gmx:100785005 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g2990 02 63473829 63477231 Dod02g2990 02 63473829 63477231 ECH
Dod02g2990 02 63473829 63477231 Dod06g0831 06 10333640 10336935 PCT