Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2656 ATGGCCATTGTAAAGAGAGGTATTATTGTTGTTATCTGCTTTGCATTGGCCTATAATGCGGATGCCGAGCCAAGACAAAGACCTGTGGGTGGTCCAGATATCTACAGGGGTAAAAATGTAGCGAAGGATGTGCTTCTTCCTGGGGAGAAAGTAAATGATGTAATGCATTTTGGAGCCAAACCTGATGGCAAGTTCGACTGCACTCAGGCTTTCATGGATGCATGGCAAGCAACCTGCAAATCCCCCGTGCAAAGTAGATTTGTTGTTCCTCCTGGAAGATTCTTGGTTTCTTCAATCATTTTTTCTGGGCCATGCCTTTCTCCAAATCCCGTAACAGTTCGAGTTGATGGGACTGTTTTGGCTTCTACGGATATTTCTGAATTTGAAAACGGTGAGTGGCTCATGTTCCAGAACCTCGATGGCATTAAACTTATTGGTAGTGGTATATTTGATGGGCAAGGTAAAAAATCATGGGAAACCACGGAGAATTGCGAATCAAGCCCCGATGGTTCATGCATTAGAAACCCTAGCAGCCTTTTTTTCAGCCACGTCAACAATGCACTTGTACAGGGCATCAGATCCTTTAATCCCAAAGGCTTTCACATATTCGTTACAAACAGTGCAAACTTTAGGTTACGAAAGCTTAAGCTCGTTGCACCAGGGACCAGCCCCAACACTGATGGCATTCATATCAGCCACTCCATAAATGTGATCATGTCCAGAAATACAATTGCAACTGGAGATGATTGTGTATCTATGATACAAGGAGTGGCAAATGTTACCATCAATAGACTAAAGTGTGGCCCTGGACATGGTGTTAGTATTGGTAGCCTTGGAAAGTATGAGGATGAGATAGAGGTAAAAGGCGTTCGTGTCTTGAGCTCCTCATTGATCGGCACAACCAATGGCCTCAGAATCAAGGCATGGCCAGACAAATTTCCAGGTGCAGCCTCAGATGTATGGTTCAGAGACATAACCATGGAAAATGTTAAAAATCCTATCATCATTGACCAGGAGTATGAATGCTTTCCAAACTGCAAAAAGAAGCCATCACTTGTAAAGATAAAGAATGTTCATTTTATAAATATAAAGGGAACTACAATCTCACCAGTTGCAGTGGACCTGAGGTGCAGTCAATTGTTCCCATGCGAAGGTGTTACACTTCAAAATATTGAGCTCAAGCTTGGATCAGCTCCTGCTATCTCTAGATGTGAAAATATTAAACCTGTCTTTGGTGGCTTGCAAATCCCACCGGCTTGCCTATAG 1266 0.4305 MAIVKRGIIVVICFALAYNADAEPRQRPVGGPDIYRGKNVAKDVLLPGEKVNDVMHFGAKPDGKFDCTQAFMDAWQATCKSPVQSRFVVPPGRFLVSSIIFSGPCLSPNPVTVRVDGTVLASTDISEFENGEWLMFQNLDGIKLIGSGIFDGQGKKSWETTENCESSPDGSCIRNPSSLFFSHVNNALVQGIRSFNPKGFHIFVTNSANFRLRKLKLVAPGTSPNTDGIHISHSINVIMSRNTIATGDDCVSMIQGVANVTINRLKCGPGHGVSIGSLGKYEDEIEVKGVRVLSSSLIGTTNGLRIKAWPDKFPGAASDVWFRDITMENVKNPIIIDQEYECFPNCKKKPSLVKIKNVHFINIKGTTISPVAVDLRCSQLFPCEGVTLQNIELKLGSAPAISRCENIKPVFGGLQIPPACL* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2656 421 Gene3D - 46 414 IPR012334 -
Dod05g2656 421 SUPERFAMILY Pectin lyase-like 47 421 IPR011050 -
Dod05g2656 421 ProSitePatterns Polygalacturonase active site. 264 277 IPR000743 GO:0004650|GO:0005975
Dod05g2656 421 PANTHER POLYGALACTURONASE 2 420 - -
Dod05g2656 421 PANTHER - 2 420 - -
Dod05g2656 421 Pfam Glycosyl hydrolases family 28 79 408 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2656 Dod-Chr5 52759918 52762628 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2656 53 420 Glycoside Hydrolase AT4G18180 45.078 1.67e-103 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2656 K01213 - gmx:106796220 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2656 05 52759918 52762628 Dod05g2656 05 52759918 52762628 ECH
Dod05g2656 05 52759918 52762628 Dod03g1287 03 16394277 16397218 PCT