Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2643 ATGCTAGTGGCATTGCTACTGCTGCTGGCATTGAGCAATGAAGTCAGAGTTAATGGTGATGGTGGTGGAGGTGGGCAATGTGAGTTTAATCCAGCACTAAAGCCAAGGCCACACAGTGTCTCCATTCTGGAGTTTGGTGCGGTTGGGGATGGTAAAACACTGAACACTATTGCATTCCAGAATGCCATATTCTATCTCAAGTCATTTGCTGACAAGGGTGGTGCTCAGCTTTATGTACCGCCTGGAAAATGGCTCACTGGAAGCCTCAATCTTACTAGTCATCTTACCCTCTTTTTGGAAAAGGATGCTGTCGTTGTTGGATCTCAGGATCCATTGCATTGGGAAGTTGTTGATCCTTTACCTTCTTATGGCCGAGGGGTCGAAGTTCCTGGGGGAAGATATCAGAGCTTGATAAATGGATACATGTTAAATGATGTGGTCATAACAGGCAACAATGGGACTATTGATGGCATGGGATTGGTTTGGTGGGAATCATTTAGGTCTCATTGCTTGAACTTCAGTCGTCCTCATCTGATTGAATTGGTGGCATCTAATAATGTGGTGGTTTCAAATCTTACATTCCTGAATGCCCCTGCATATAGCATCCACCCTGTTTATTGCAGCAATGTACGTATTCAAAATATTTCAATATCTGCTCCTTCAGAATCCCCTTATACAGTTGGCATAGTACCAGATTCTTCTGATAATGTTTGTATAGAGGATTGTACAATTGCCATTGGCTTTGATGCAATTGCCCTCAAAAGTGGCTGGGATGAGTACGGCATTGCCTATGGCAGGCCCACCAAGAATGTACACATAAGAAGGGTGCATCTCCAAGCTTCTTCTGGCTCTACTCTCGCATTCGGCAGCGACATGTCCGGTGGCATTTCTAATGTTCTTGTGGAGCATGCTCATCTTTACAACTCAGAGAGTGGAATTGAGTTCAGAACCACAAGAGGTAGAGGTGGTTACATGAAAGAAATTGTCATAACAAGCACAGAAATGGAGAATATCTACACAGCAATTAGTGCCACAGGCCATTGTGGGTCTCACCCTGATGACAAATTTGACCCTAGTGCTCTCCCGCTCTTGGATCACATAATTTTGCAAGATATGATTGGCACAAACATCACTATTGCTGGAAGCTTTGCTGGACTACAAGAATCTCCCTTCACCAACATATGTCTTTCCAACATAAACTTCTCTGTAAATTCTGTTTCTCCTATTGCTTGGGAATGCTCGGACGTCTCCGGATTTTCGGATTCTGTTGTCCCCAAACCTTGTCCCGACCTTGAGAGCACTTCAGATTCTTCCTCATCTTGTTTCTCCTTGCTGAGTATCAAAGGAAAAGATGCAGTCATTTGA 1365 0.4396 MLVALLLLLALSNEVRVNGDGGGGGQCEFNPALKPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGKWLTGSLNLTSHLTLFLEKDAVVVGSQDPLHWEVVDPLPSYGRGVEVPGGRYQSLINGYMLNDVVITGNNGTIDGMGLVWWESFRSHCLNFSRPHLIELVASNNVVVSNLTFLNAPAYSIHPVYCSNVRIQNISISAPSESPYTVGIVPDSSDNVCIEDCTIAIGFDAIALKSGWDEYGIAYGRPTKNVHIRRVHLQASSGSTLAFGSDMSGGISNVLVEHAHLYNSESGIEFRTTRGRGGYMKEIVITSTEMENIYTAISATGHCGSHPDDKFDPSALPLLDHIILQDMIGTNITIAGSFAGLQESPFTNICLSNINFSVNSVSPIAWECSDVSGFSDSVVPKPCPDLESTSDSSSSCFSLLSIKGKDAVI* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2643 454 Gene3D - 30 419 IPR012334 -
Dod05g2643 454 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 2 446 - -
Dod05g2643 454 SUPERFAMILY Pectin lyase-like 33 431 IPR011050 -
Dod05g2643 454 Pfam Pectate lyase superfamily protein 40 97 IPR024535 -
Dod05g2643 454 PANTHER PECTIN LYASE-RELATED 2 446 - -
Dod05g2643 454 Pfam Glycosyl hydrolases family 28 136 417 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2643 Dod-Chr5 52652848 52655971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2643 3 437 Glycoside Hydrolase AT3G06770 62.329 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2643 - - gmx:100802343 764.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2643 05 52652848 52655971 Dod05g2643 05 52652848 52655971 ECH
Dod05g2643 05 52652848 52655971 Dod03g1279 03 16254191 16257574 PCT