Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1279 ATGCTTGTGGCATTGCTCTTGCTGCTGGCATGGAGCAATGCCGTGAGAGTTTATGGCGATGGCGGCGGCGGCAGGCAATGTGGTCTGCATCCAACACTAGATCCAAGACCACACAGTGTCTCAATTTTGGAGTTTGGTGCTGTTGGAGATGGTAAAACACTGAATACTCTTGCATTCCAGAATGCTGTCTTCTATCTCAAGTCCTTTGCTGACAAAGGTGGTGCTCAGCTATACGTGCCACCCGGAAAATGGCTCACTGGTAGTTTCAATCTCACAAGCCATCTTACTCTCTTTTTGGAAAAAGGTGCTGTCATTATTGCATCTCAGGATCCATTACATTGGGATGTTGTTGAACCCTTACCTTCTTATGGTCGAGGGCTCGAAGTTCCCGGAGGCAGATATCAGAGCTTGATTAATGGATACAAGTTACATGATGTGGTCGTAACAGGTAACAATGGAACCATTGATGGCATGGGATCTGTTTGGTGGGAGTGGTTTAGGTCTCATTCCCTGAATCACAGCCGTCCTCATCTGGTTGAACTTGTAGCATCTGATTATGTGGTAGTTTCAAATCTTACGATCTTGAATGCCCCTGCATATAGCATCCACCCAGTTTATTGCAGCCATGTACTTATTCAAAATATTTCAATTTCTGGTCCTCCAGAATCTCCTTATACTGTTGGTATAGTTCCAGATTCCTCTGATAGTGTTTGTATAGAAGATTGTATCGTTTCCATGGGATATGATGCAATTTCCCTCAAAAGTGGCTGGGATGAGTATGGCATTGCCTATGGCAGGCCCACTGAGAATGTGCACATCAGAAGGGTGCATCTAAATGCATTTTCTGGCTCTGCTCTTGCATTTGGCAGCGACATGTCTGGTGGTATTTCAAATGTTCTTGTGGAGCATGCTCATCTTTTTGACTCAAGTAGTGGCATTGAGTTTAGAACCACCAAAGGAAGAGGCGGCTATATGAAAGAAATTGTCATATCTGACATACAAATGGATAATGTCTATACTGCAATTGCTGCCACAGGTGATTGCGGGTCTCATCCTGATGACAAGTTTGATCCAAATGCTCTCCCGCGATTGAATTACATCACCTTGAAGGATGTTACTGGCACAAACATCACCATTGCTGGAAGCTTTGCTGGAATAGAGGAATCCCCCTTCACTAACATATGCCTTTCCAATGTATCCTTGTCTACAAATTCTATTTCTCCAGTTACCTGGGAATGCTCAAATGTCTCGGGATTTTCAGACTCTGTCCACCCGGAACCTTGTCCAGAACTTATGAACCCTGCAAATTCTTCCTCATCCTGTTTCTACCTCCTGAGTATCAGTGGAAGAAAAGCTTCAGTGCTGTGA 1368 0.443 MLVALLLLLAWSNAVRVYGDGGGGRQCGLHPTLDPRPHSVSILEFGAVGDGKTLNTLAFQNAVFYLKSFADKGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGAVIIASQDPLHWDVVEPLPSYGRGLEVPGGRYQSLINGYKLHDVVVTGNNGTIDGMGSVWWEWFRSHSLNHSRPHLVELVASDYVVVSNLTILNAPAYSIHPVYCSHVLIQNISISGPPESPYTVGIVPDSSDSVCIEDCIVSMGYDAISLKSGWDEYGIAYGRPTENVHIRRVHLNAFSGSALAFGSDMSGGISNVLVEHAHLFDSSSGIEFRTTKGRGGYMKEIVISDIQMDNVYTAIAATGDCGSHPDDKFDPNALPRLNYITLKDVTGTNITIAGSFAGIEESPFTNICLSNVSLSTNSISPVTWECSNVSGFSDSVHPEPCPELMNPANSSSSCFYLLSISGRKASVL* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1279 455 PANTHER PECTIN LYASE-RELATED 2 447 - -
Dod03g1279 455 Gene3D - 30 422 IPR012334 -
Dod03g1279 455 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 2 447 - -
Dod03g1279 455 Pfam Pectate lyase superfamily protein 40 97 IPR024535 -
Dod03g1279 455 Pfam Glycosyl hydrolases family 28 136 417 IPR000743 GO:0004650|GO:0005975
Dod03g1279 455 SUPERFAMILY Pectin lyase-like 34 432 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1279 Dod-Chr3 16254191 16257574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1279 3 437 Glycoside Hydrolase AT3G06770 65.525 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1279 - - gmx:100777503 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1279 03 16254191 16257574 Dod03g1279 03 16254191 16257574 ECH
Dod05g2643 05 52652848 52655971 Dod03g1279 03 16254191 16257574 PCT