Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2640 ATGGGAGTCGCAAACTTTACACAGGAGTATTCATCTCCTGTTGCGCCATCACGCATGTTCCAGGCCTTGATCATCGACTCCAGAGCTTTGATTCCAAAGCTCTTGCCACAGTTTGTAAAAGAAGTCAACCTCATCCAAGGAAATGGAGAAGCTGGAAGCGTTGAACAAGTTAACTTCAATGAAGCTAGCCCCTTCAAATATCTGAAACAAAGGATTGATGTTCTTGATAAGGACAACTTGGTTTGCAAATACACCATGATTGAAGGGGATCCATTAGGTGACAAGCTTGAGTCTATAGCCTATGAGGTGAAGTTTGAGGCCGCTAGTGATGGAGGTTGCCTTTGTAAGATGACAAGCTGTTACAAGACCATTGGAGATTATGAAGTCAGCGAGGAAGAGGTAAAGGAAGGAAGGGAAAGCACCACTGGAATCTACAGAGTTGTGGAGTCATACCTGCAGGAGAACCCACAAGTGTATGCTTAA 483 0.4431 MGVANFTQEYSSPVAPSRMFQALIIDSRALIPKLLPQFVKEVNLIQGNGEAGSVEQVNFNEASPFKYLKQRIDVLDKDNLVCKYTMIEGDPLGDKLESIAYEVKFEAASDGGCLCKMTSCYKTIGDYEVSEEEVKEGRESTTGIYRVVESYLQENPQVYA* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2640 160 PANTHER - 1 160 - -
Dod05g2640 160 Pfam Pathogenesis-related protein Bet v 1 family 1 150 IPR000916 GO:0006952
Dod05g2640 160 CDD Bet_v1-like 6 152 - -
Dod05g2640 160 PANTHER PATHOGENESIS-RELATED PROTEIN BET V I FAMILY PROTEIN 1 160 - -
Dod05g2640 160 SUPERFAMILY Bet v1-like 2 159 - -
Dod05g2640 160 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 89 121 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Dod05g2640 160 Gene3D - 1 160 IPR023393 -
Dod05g2640 160 PRINTS Major pollen allergen Bet V1 signature 85 98 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Dod05g2640 160 PRINTS Major pollen allergen Bet V1 signature 110 126 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Dod05g2640 160 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Dod05g2640 160 PRINTS Major pollen allergen Bet V1 signature 144 154 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Dod05g2640 160 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Dod05g2640 160 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Dod05g2640 160 PRINTS Major pollen allergen Bet V1 signature 66 85 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2640 Dod-Chr5 52641704 52642280 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2640 - - gmx:100500506 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2640 05 52641704 52642280 Dod05g2640 05 52641704 52642280 ECH
Dod03g1273 03 16156880 16158515 Dod05g2640 05 52641704 52642280 PCT