Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2588 ATGGCCACTGGACAACTATTCTCCCGTGACACACAAGCTTTATTTTACAATTACAAGCAACTCCCCATCCAGCGGATGCTTGATTTTGACTTCCTTTGCGGTAGGGAAACACCATCCGTTGCTGGAATAATTAATCCTGGTTCTGAGGGATTTCAGAAGCTCTTTTTTGGTCAGGAAGAAATTGCCATCCCAGTTCATGCTAACATTGAAGCAGCTTGTGCTGCACATCCTACTGCTGATGTATTCATCAACTTTGCATCATTTAGAAGTGCTGCTGCATCATCCATGGCTGCTTTGAAGCAGCCAACAATTAGAGTTGTTGCTATTATTGCTGAAGGTGTACCTGAATCAGACACTAAGCAATTGATTGCATATGCCCGGGCAAACAATAAGGTTGTTATTGGCCCAGCCACCGTCGGAGGCATTCAAGCTGGTGCTTTTAAGATAGGTGACACAGCAGGAACGATTGACAATATAATTCATTGCAAGCTCTATAGGCCTGGATCTGTTGGATTTGTCTCTAAATCTGGTGGGATGTCCAATGAATTATACAACACTATTGCCCTTCTATCCCGTTTTGCGATAGGCATTGCCATTGGAGGAGATGTTTTTCCGGCTTCCACACTTTCTGACCATGTTTTACGGTTTAACAACATACCCCAGGTTAAAATGATGGTAGTACTTGGGGAACTTGGTGGTAGTGATGAGTATTCTCTAGTGGAAGCACTAAAACAAGGGAAAGTGACAAAGCCGGTTGTTGCCTGGGTTAGCGGAACCTGTGCACAACTCTTCAAATCTGAAGTGCAATTTGGTCATGCTGGAGCTAAAAGTGGCGGTGAAATGGAGTCTGCTCAAGCAAAGAATCAGGCACTAAAGGAAGCTGGAGCTGTTGTTCCCACTTCATATGAAGCTTTTGAAGATGCAATAAGGGAAACGTTTAACAAGTTGGTTGAAGGAGGGCAGATCGCACAAGTGAAGGAGTTTACCCCTCCACCAATCCCTGAGGACCTTAACTCTGCAATTAGGAGTGGAAAAGTCCGTGCTCCAACTCATATTATTTCTACCATCTCTGATGACAGAGGTGAGGAGCCGTGCTATGCTGGTGTTCCCATGTCTTCTATTATTGAAAAGGGTTATGGTGTGGGTGATGTCATCTCTTTTTTGTGGTTCAAACGCAGCCTTCCCCGATATTGCACTCAATTTATTGAGATATGCATCATTCTATGTGCCGACCATGGTCCATGTGTCTCTGGTGCTCACAATGCCATAGTGACAGCAAGGGCTGGGAAGGACCTTGTCTCCAGTCTTGTATCAGGTTTGCTTACAATTGGTCCTCGATTTGGGGGTGCCATTGATGATGCTGCTCGCTACTTCAAGGATGCTTATGACAGAAGTCTTACACCTTATGAGTTTGTTGAAAGTATGAAGAAGAAAGGCATTCGTGTGCCAGGAATAGGGCACAGAATCAAGAGTAGGGATAACAAAGATAAGAGAGTCGAGCTGCTACAGAAGTTTGCGCGCACACATTTTCCTTCTGTGAAATACATGGAATATGCTGTTGAAGTTGAAAACTATACCCTTACAAAGGCAAATAACCTAGTTCTTAACGTAGATGGTGCAATTGGGTCCCTTTTCTTGGATCTTCTTGCTGGTAGTGGAATGTTCACCAAACAAGAGATTGATGAAATTGTGGAGATTGGCTATCTGAATGGGCTTTTTGTTCTGGCACGCTCCATTGGTCTTATTGGGCATACATTTGACCAAAAGAGATTGAAACAGCCACTCTACCGCCACCCATGGGAGGATGTTCTTTACACAAAGTGA 1824 0.4408 MATGQLFSRDTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHANIEAACAAHPTADVFINFASFRSAAASSMAALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIALLSRFAIGIAIGGDVFPASTLSDHVLRFNNIPQVKMMVVLGELGGSDEYSLVEALKQGKVTKPVVAWVSGTCAQLFKSEVQFGHAGAKSGGEMESAQAKNQALKEAGAVVPTSYEAFEDAIRETFNKLVEGGQIAQVKEFTPPPIPEDLNSAIRSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIIEKGYGVGDVISFLWFKRSLPRYCTQFIEICIILCADHGPCVSGAHNAIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRSLTPYEFVESMKKKGIRVPGIGHRIKSRDNKDKRVELLQKFARTHFPSVKYMEYAVEVENYTLTKANNLVLNVDGAIGSLFLDLLAGSGMFTKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2588 607 SUPERFAMILY Citrate synthase 134 605 IPR036969 GO:0046912
Dod05g2588 607 PANTHER ATP-CITRATE SYNTHASE 1 607 - -
Dod05g2588 607 Gene3D - 138 322 IPR016102 -
Dod05g2588 607 PANTHER ATP-CITRATE SYNTHASE BETA CHAIN PROTEIN 2-LIKE 1 607 - -
Dod05g2588 607 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 258 274 IPR017440 -
Dod05g2588 607 Pfam Citrate synthase, C-terminal domain 398 597 IPR002020 GO:0046912
Dod05g2588 607 Gene3D Citrate Synthase, domain 1 399 597 IPR016142 -
Dod05g2588 607 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 136 IPR036291 -
Dod05g2588 607 Gene3D - 2 137 - -
Dod05g2588 607 CDD CCL_ACL-C 368 605 - -
Dod05g2588 607 Gene3D - 450 551 IPR016143 -
Dod05g2588 607 Pfam CoA-ligase 176 297 IPR005811 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2588 Dod-Chr5 52161933 52167371 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2588 1 607 Acyl Lipid Metabolism Gene Families AT3G06650 90.789 0.0 1105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2588 K01648 - gmx:100801407 1130.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2588 05 52161933 52167371 Dod05g2588 05 52161933 52167371 ECH
Dod05g2588 05 52161933 52167371 Dod03g1208 03 15131183 15138011 PCT