Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1208 ATGCTACCATTGAAGCAGCTTGTGCTGCACATCCTACTGCTGATGTCTTCATCAATTTTGCATCATTTAGAAGTGCCTGCTGCATCATCCATGGCCGCTTTGAAGCAACCAACAATTAGAGTTGTTGCTATAATTGCTGAAGGAGTACCAGAGTCAGACACTAAGCAATTGATTGCATATGCCAGGTCAAACAATAAGGTTGTTATTGGCCCAGCCACTGTTGGAGGCATTCAAGCTGGTGCTTTTAAGATTGGGGACACAGCTGGAACAATTGACAATATAATTCAGTGCAAGCTCTACAGGCCTGGATCTGTTGGATTTGTTTCCAAATCTGGTGGGATGTCCAATGAATTATACAACACTATTAGTCGTGTAACAGACGGAATTTATGAAGGCATTGCCATTGGAGGAGATGTTTTCCCAGGCTCCACACTTTCTGACCATGTTTTGCGGTTTAACAACATGCCACAGGTTAAAATGATGGTTGTCCTTGGTGAACTTGGTGGGCGTGATGAGTATTCCCTGGTTGAAGCCCTAAAACAAGGGAAAGTGACAAAACCGGTTGTTGCCTGGGTTAGTGGAACCTGTGCAAGACTCTTCAAATCTGAAGTACAATTTGGTCATGCTGGAGCCAAGAGTGGCGGTGAGATGGAATCTGCTCAAGCGAAGAATCAGGCACTAAGGGAAGCTGGAGCTGTTGTTCCCACTTCATACGAAGCTTTTGAAGCTGCAATTAAAGAAACATTTGACAAATTGGCTGAAGAAGGGAAAATCACACCAGTGAAGGAATTTACTCCTCCACCAATCCCTGAGGACCTTAGCTCTGCAATTAAGAGCGGAAAAGTCCGTGCTCCAACTCATATTATTTCCACCATTTCTGATGACAGAGGTGAGGAACCATGCTATGCTGGTGTACCCATGTCTTCCATCATTGAAAAGGGTTATGGTGTGGGCGATGTTATCTCTCTTTTGTGGTTTAAACGCAGTCTTCCCCGTTATTGTACTCAATTTATTGAGATCTGCATCATGCTATGTGCTGATCATGGTCCTTGTGTCTCTGGTGCCCACAATACTATTGTGACAGCAAGGGCTGGGAAGGACCTAGTTTCCAGTCTTGTATCAGGTTTGCTTACAATTGGTCCTCGATTTGGGGGTGCCATTGATGATGCTGCCCGCTACTTCAAGGATGCTCATGACAGGAGTCTCACACCTTATGAGTTTGTAGAAAATATGAAGAAGAAGGGAATTCGTGTTCCAGGAATAGGGCACAGGATCAAGAATAGGGACAACAAGGACAAGAGAGTTGAACTGCTACAGCGGTTTGCACGGACACATTTTCCTTCCGTGAAATACATGGAATATGCTGTTCAAGTTGAAACCTACACCCTCACAAAGGCAAATAATCTAGTTCTTAACGTAGATGGTGCAATTGGGTCCCTTTTCTTGGATCTCCTTGCTGGTAGTGGAATGTTTACCAAGCAAGAGATTGACGAAATTGTCGGAGATTGGCTATCTGAATGGTCTCTTTGTGCTGGCACGCTCCATTGGTCTGATTGGGCATACCTTTGA 1569 0.4449 MLPLKQLVLHILLLMSSSILHHLEVPAASSMAALKQPTIRVVAIIAEGVPESDTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIQCKLYRPGSVGFVSKSGGMSNELYNTISRVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNMPQVKMMVVLGELGGRDEYSLVEALKQGKVTKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALREAGAVVPTSYEAFEAAIKETFDKLAEEGKITPVKEFTPPPIPEDLSSAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIIEKGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAHDRSLTPYEFVENMKKKGIRVPGIGHRIKNRDNKDKRVELLQRFARTHFPSVKYMEYAVQVETYTLTKANNLVLNVDGAIGSLFLDLLAGSGMFTKQEIDEIVGDWLSEWSLCAGTLHWSDWAYL* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1208 522 Gene3D - 385 482 IPR016143 -
Dod03g1208 522 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 3. 103 128 IPR017866 -
Dod03g1208 522 Pfam Citrate synthase, C-terminal domain 334 492 IPR002020 GO:0046912
Dod03g1208 522 PANTHER ATP-CITRATE SYNTHASE BETA CHAIN PROTEIN 1 23 500 - -
Dod03g1208 522 Pfam CoA-ligase 108 233 IPR005811 GO:0003824
Dod03g1208 522 Gene3D - 16 72 - -
Dod03g1208 522 SUPERFAMILY Citrate synthase 65 492 IPR036969 GO:0046912
Dod03g1208 522 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 109 138 IPR033847 -
Dod03g1208 522 PRINTS Succinyl-CoA synthase signature 165 178 - -
Dod03g1208 522 PRINTS Succinyl-CoA synthase signature 31 48 - -
Dod03g1208 522 PRINTS Succinyl-CoA synthase signature 134 152 - -
Dod03g1208 522 PRINTS Succinyl-CoA synthase signature 201 218 - -
Dod03g1208 522 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 194 210 IPR017440 -
Dod03g1208 522 PANTHER ATP-CITRATE SYNTHASE 23 500 - -
Dod03g1208 522 CDD CCL_ACL-C 304 494 - -
Dod03g1208 522 Gene3D - 73 258 IPR016102 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1208 Dod-Chr3 15131183 15138011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1208 34 500 Acyl Lipid Metabolism Gene Families AT3G06650 92.505 0.0 904
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1208 K01648 - gmx:100795745 919.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1208 03 15131183 15138011 Dod03g1208 03 15131183 15138011 ECH
Dod05g2588 05 52161933 52167371 Dod03g1208 03 15131183 15138011 PCT