Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2544 ATGTTCTTCAGCGGCGATCCTTCTACCAGGAAGCGCGTCGATTTGGGCGGTCGCAGCTCGAAGGAGAGGGACCGCAATAACCTTCTAGAACAGACGCGAGTCGAACGCAACCGTCGATTGTGGTTGCGCCAGCAGAACTCTGCTGCACTGAAGATTCAGAAATGCTTCAGAGGGAGAAAAGCTATCAGAGCTGAACAGTCTAAGATGCGAGAGCAGTTCTATAAAACCTATGGGAAGTACTGCCAGAATGTAGACAGGAATTCGTTTGGTCTGGACTCTGATTTCCTCCGACAGTTCCTTTATTTCTTTAAGGCAGAAAATGAAGATGATTTTTTAGTTCTTGTGCAAATATGCCGGTTGCTTCAGCGGTTTGTTCAAGAAGATGGGGATATTGCAAGACTTTTAGCAGGTGTGGATTACTCATCTGCTTGTGGTTTGGTGAACTACCGAGTGAAGCAACTTGTATATGCTTGTATTCGTGCTCTACATCAGAATAGAAATCAGTTGAAGGATCAGCTTTTATTGAGTCCTGAAGAATTGAACGTGTCAGCTGTGCCTTTGTTGGAAGCTTTAGTATTGTTAATAGATCCCAAATGGCCATGGAGCTGCAAGATAGTAGAATATCTCTTTCAAAACAATGCATTTGGCCTACTCAGAGAGATTATTCTTATGGGAAAGGATAATGCAGAAAATCATTTTTCCATCAGAAAGGGATCGTCATTGGAGCGTGTGCTTATGGTTGTAATATGTCACATTGGTCAGAAGCCATGCATTTGTTCAGATACTACTAATACAAGATATAGCTTTGCATCACAGATCATTACAATTCCTTTCTTGTGGCATCTTTTCCCAAACTTAAGACAGGTTTTTGCTACACAGGGCATGAGCCAACATTACATACATCATATGGCAACATTTGGGCAAAATTTAATCAATTTGCTACCTACGGATGTATCAAATGAATTTCCTAGCCATGCCTGTATGCTTGGAAATATATTAGAAACTGCCGGAATTGCTTTGTCTGAGCCTGCCTGTTCATTTGATATGGCCATAGACCTTGCTGCTGTTACTATGTTTTTATTGGAGGCACTCCCAACCGTGAAAACATCTGATAATAGAGAAAATTCTATGATTCTTGAGGATGATATGATTGGAGATGAAGAAGTCGTGGAAGTAGCTTTGGATAGGAATTTGGAGCAGCAAATTTATAATGCCATAAATCCTCGCTTCCTACTACAACTGACAAATATACTATTTAGGGAGATTTCATCTGTCAATGGTTCAGAGTATGGACCAGATGATAGAGAGGTGACAGCAGTTGGTGCGGTTTGTGGGTTTTTATATGTTGCCTTCAGCAAACTGCCACATGAACGGATTATGACTGTGCTTGCATATAGAACTGAACTTGTTCCTATACTTTGGAATTTCATGAAGCGATGCCATGAGAATAAAAAATGGTCATCTTTGTCTGAGTGGTTATCATACCTATCGAGTGATGCACCTGGTTGGCTATTACCTCTTGCCGTATTCTGTCCTGTCTACAAGCACATGCTTATGATAGTTGATAATGAAGAATTTTATGAGCAGGAGAAACCACTATCACTCAAGGATATTAGAAGCCTCATCATTATATTGAGACAGGCTCTATGGCAGTTGCTGTGGGTGAATCACACCACAACAGCTAATTCAGTAAAATCTGTTCCGGTTCGTTCAGCTAGTAAGCGGCAGTCCGTTGAAGCTATTCAACAGAGGGTTAGCATTGTAGTTTCCGAGCTTCTTTCCCAGCTGCAAGATTGGAACAACAGACGGGAGTTTACATCCCCTGGTGACTTCCATGCTGATGGGGTGAATGACTTCTTTACCTCTCAGGCTCTAACAGAAAATACACGAGCAAATGAAATTTTGAAGCAGGCCCCTTTCTTGATACCATTTACTAGCAGGGTTAAAATATTCTCTTCTCAACTAGCTGCTGTTAGGCAAAGAGATGGATCTCAGGCTGTATTTACTCGAAACCGATTCAGAATAAAACGGGATCGTATTTTGGAAGATGCTTATAATCAAATGAGCCAGTTGTCAGAAGATAATCTTCGAGGAATGATTCGTGTTACTTTTGTCAATGAATTTGGAGTTGAAGAGGCTGGAATTGATGGTGGTGGAATATTCAAAGATTTTATGGAGAACATCACACGTGCTGCCTTTGATGTGCAGTATGGATTATTCAAGGAAACAGCAGATCACCTGCTTTATCCTAATCCTGGTTCAGGAATGATACATGAACAACATTTCCAGTTTTTCCACTTTCTTGGTACTATTCTTGGAAAGGCTATGTTTGAAGGGATTCTGGTTGATATACCATTTGCTACCTTCTTCTTGAGCAAACTGAAACAAAAGTACAACTATTTGAATGACTTGCCTTCCTTGGACCCGGAATTATATCGCCATCTTATTTTTCTCAAGCATTATGAGGGTGACATTTCAGAGTTGGAACTATACTTTGTTATAGTAAACAATGAATATGGAGAGCAAGCAGAGGAGGAATTGCTCCCTGGGGGGAGGAACCTACGTGTCACTAATGACAATGTCATTACTTTTATTCATCTTGTAGCTAATCATCGCTTGAATTTTCAGATACGTCAACAAAGCTCTCATTTCTTGAGGGGATTTCAGCAACTTATTCAGAACGATTGGATTGATATGTTTAATGAGCATGAACTCCAGCTTCTGATATCTGGTTCAGTTGACAGCTTGGATGTTGATGATTTGCGGGCGCATACAAACTATGCAGGAGGCTATCATAGTGATCATTATGTGATTGAGATGTTTTGGGAAGTTCTCAAAGGCTTTTCGTTGGAAAACAGGAAGAAATTTCTCAAGTTTGTGACGGGATGCTCTCGTGGACCATTGCTTGGTTTCCGATATCTTGAACCTTTGTTTTGCATACAAAGGGCTGCTGGTACGGCTTCTGAGGAAGCTCTTGATCGATTACCGACGTCGGCTACTTGTATGAATCTATTAAAGCTTCCGCCTTATAAAAGTAAGGAGCAAATGGAAACCAAATTGCTGTATGCCATAAATGCTGATGCTGGCTTTGATCTAAGTTAA 3102 0.4081 MFFSGDPSTRKRVDLGGRSSKERDRNNLLEQTRVERNRRLWLRQQNSAALKIQKCFRGRKAIRAEQSKMREQFYKTYGKYCQNVDRNSFGLDSDFLRQFLYFFKAENEDDFLVLVQICRLLQRFVQEDGDIARLLAGVDYSSACGLVNYRVKQLVYACIRALHQNRNQLKDQLLLSPEELNVSAVPLLEALVLLIDPKWPWSCKIVEYLFQNNAFGLLREIILMGKDNAENHFSIRKGSSLERVLMVVICHIGQKPCICSDTTNTRYSFASQIITIPFLWHLFPNLRQVFATQGMSQHYIHHMATFGQNLINLLPTDVSNEFPSHACMLGNILETAGIALSEPACSFDMAIDLAAVTMFLLEALPTVKTSDNRENSMILEDDMIGDEEVVEVALDRNLEQQIYNAINPRFLLQLTNILFREISSVNGSEYGPDDREVTAVGAVCGFLYVAFSKLPHERIMTVLAYRTELVPILWNFMKRCHENKKWSSLSEWLSYLSSDAPGWLLPLAVFCPVYKHMLMIVDNEEFYEQEKPLSLKDIRSLIIILRQALWQLLWVNHTTTANSVKSVPVRSASKRQSVEAIQQRVSIVVSELLSQLQDWNNRREFTSPGDFHADGVNDFFTSQALTENTRANEILKQAPFLIPFTSRVKIFSSQLAAVRQRDGSQAVFTRNRFRIKRDRILEDAYNQMSQLSEDNLRGMIRVTFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHFQFFHFLGTILGKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEGDISELELYFVIVNNEYGEQAEEELLPGGRNLRVTNDNVITFIHLVANHRLNFQIRQQSSHFLRGFQQLIQNDWIDMFNEHELQLLISGSVDSLDVDDLRAHTNYAGGYHSDHYVIEMFWEVLKGFSLENRKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAAGTASEEALDRLPTSATCMNLLKLPPYKSKEQMETKLLYAINADAGFDLS* 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2544 1033 Gene3D Hect, E3 ligase catalytic domain 797 876 - -
Dod05g2544 1033 Gene3D Hect, E3 ligase catalytic domains 673 911 - -
Dod05g2544 1033 CDD HECTc 671 1031 IPR000569 GO:0004842
Dod05g2544 1033 ProSiteProfiles HECT domain profile. 692 1033 IPR000569 GO:0004842
Dod05g2544 1033 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Dod05g2544 1033 SMART hect_3 690 1033 IPR000569 GO:0004842
Dod05g2544 1033 Pfam HECT-domain (ubiquitin-transferase) 728 1033 IPR000569 GO:0004842
Dod05g2544 1033 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 1 1033 IPR044611 GO:0000209|GO:0061630
Dod05g2544 1033 SUPERFAMILY Hect, E3 ligase catalytic domain 663 1025 IPR035983 GO:0004842
Dod05g2544 1033 MobiDBLite consensus disorder prediction 1 21 - -
Dod05g2544 1033 PANTHER BNAC01G43970D PROTEIN 1 1033 - -
Dod05g2544 1033 Gene3D Hect, E3 ligase catalytic domain 915 1032 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2544 Dod-Chr5 51683327 51695728 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2544 K10589 - gmx:100789933 1790.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2544 05 51683327 51695728 Dod05g2544 05 51683327 51695728 ECH
Dod05g2544 05 51683327 51695728 Dod03g1178 03 14615056 14655713 PCT