Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1178 ATGTTCTTCAGCGGTGATCCGTCGACGCGTAAGCGTGTTGATTTAGGTGGCCGCAGCTCGAAGGAGAGGGACCGGAAGAATCTTCTGCAACAGACGAGATTGGAGCGCAATAAGCGCCAGTGGTTGCGCCAGCAGAACACTGCTGCGCTCAAGATTCAGAAATGCTTCAGAGGGAGAAAAGTTGTCAGAACTGAACAGTCTAAGCTGCGAGAGAAATTCTATAAAATCTATGGGAAGCACTGCCAGAATTTAGCCAGGAATGCTTTTGGTCCAGATTCTGATTTCCTCCGCCAGTTCCTCTATTTCTTTAATGCAGAAAATATTGATGATGTTTTAGTTCTAGTGCAAATTTGCCGATTGCTTCAACAGTTTGTTCAAGAGAGTGGGGATGTTGTGGGACTTCTTGCTGGTGTGGATTACTCATCCACGTGTGCTTTGGTGAACCATCGAGTGAAGCAATTTGTATATACTTGCATTCTTGCCATACATCAGAATAGAATTCAGTTGAAGGATCAACTTTTATTGACTCCTGGGAAATCTAATGCATCAGCTGTTTCTTTATTGGAAGTATTAGTATTGTTAATAGATACCAAACTGCCTTGGAGCTGTATGGTAGTAGTATATCTGCATCAAAACAATGCATTTGGCCTACTTAGAGATATTGTTCTAACTGGAAAGGATAATGCAGAAAATTGTATTTACAGTGCAAAAGGATCATCACTGGAGCGTGTGGTTACAGTTGTAGTACATCACATTGGTCAGAAGCCATGTACCTGTTCACATATTGATCCAAGATATAGCTTCACTTCGCAAATCCTTACAATTCCTTTCTTGTGGGATGTTTTTCCAAACTTAAGACTGGTTTTTGCAACACAGGGCCTGAGCCAACATTATGTTCATCAAATGGCAGCTGTTGTACCAAATCTGATCAGTTTTCTACCTGAGGATATATCAGATGAAATTCCTACCTATGCCTGTCTGCTTGGAAACATATTAGAAACTGCTGGAGTCACTTTGTCTCAACCTGACTGTTCATTTGATGCAGCTATAGACCTTGCTGCTGTTGCTACGTTTTTGCTTGAGGCACATGCTGCACACCCGTCTCTGAGAACATTCAAGAGTAGAGAAAATTCTATGACTACTGAGGATGATATGACTGGCGATGATGAAGTTACGGAAGTAGCTTTGGATCGGAAACTGGAGCAACAAATTTGCAATGCCATAGATACTTGCTTCCTTTTGCAACTGACAAATATATTATTTAGAGATATTTCATATGTCAATGGTTCAGATTATGGGCCAGATGATCGGGAGGTTGCAGCTGTTGGTGCAGTTTGTGGATTTTTATATGTTACCTTAAACACATTGCCGCTTGAAAGGATTGTGACTGTACTTGCCTATAGAACTGAACTTGTTCCTATTCTCTGGAGTTTGATGAAGCGGTGGAGCCATGAGAATAAAAAATGGTTGTCTTTGTCAGAGCGGCTCTCATATCTCTCAGGTGATGCACCTGGTTGGCTGTTACCTCTGGCTGTATTCTGTCCTGTCTACAAGCATATGCTCATGATAGTTGATAATGAGCAATTCTATGAGCAGGAGAAACCACTATCACTGAAGGATATTAGAAGCCTCATTATTCTGTTGAGACAGGTTCTGTGGCAGCTACTGTGGGTGAATCCTCCATTATCTGCTAATTCGGTAAAATCTGCTCCTGCTAGCACAGCTAGTAAAAGGCAGTCTATAGAAGCCATCCAACAGAGGGTTAGCATTGTAGTCTCTGAGCTCCTCTCCCAGCTTCAGGATTGGAACAATCGACAAGAGTTTACATCCCCCACTGACTTCCATGCTGATGGGGTGAATGAATCCTTTATCTCTCAGGCTGTAATAGAAAAAACAAGAGCAAATGAAGTTTTGAAGCAGGCTGCTTTATTGGTACCATTTACAAGCAGGGTTCAAATATTCACTTCTCAACTTGCTGCTGTCCGGCAAAGAAATGAATCTCAGCCTGTATTTACTAGAACTCGATTCAGAATAAGACGAGATCATATTTTGGAAGATGCTTATGATCAAATGAGTCAGTTGTCAGAAGATGATCTTCGAGGATCGGTTCGTGTGACTTTTGTCAATGAATTTGGAGTTGAGGAGGCTGGAATTGATGGAGGTGGAATATTCAAAGATTTCATGGAGAACATAACACGTGCTGCCTTTGATGTGCAGTATGGATTATTTAAGGAAACAGCGGATCACCTGCTTTATCCTAATCCCGGATCTGGAATGATTCATGAACAACATCTCCAATTTTTCCACTTTCTTGGTACACTTCTTGCTAAGGCTATGTTTGAAGGGATTCTGGTTGATTTACCATTTGCTACATTCTTTTTGAGCAAATTGAAACAAAAGCACAACTATTTGAATGACTTACCTTCCTTGGACCCCGAATTATATCGTCACCTTATATTTCTAAAGCATTATAAGGGTGACATCTCGGAGTTGGAACTATACTTTGTTATAGTAAACAACGAATATGGAGAGCAAAATGAAGAGGAGCTGCTTCCAGGGGGAAAAAGTATACATGTCACTAATGAGAATGTCATTACTTTCATCCATCTTGTAGCCAATCATCGCTTGAATTTTCAGATACGTCAACAAAGTTCTCATTTCCTGAGAGGATTTCAGCAACTTATTCAGAAGGATTGGATTGATATGTTTAATGAGCATGAACTTCAGCTTCTGATATCAGGTTCACTTGACAGCTTGGACGTTGATGATCTGCGGCTGCATACAAACTATGCTGGAGGCTATCATAGTGAGCATTATGTGATTGAGATGTTCTGGGAAGTTCTCAATGGCTTTTCATTGGAAAACAAGAAAAAAATTTTGAAGTTTGTGACAGGTTGCTCTCGGGGACCATTGCTTGGATTCCGATATCTTGAACCTTCGTTTTGCATACAAAGGGCTGGTGATGACGAAGCTCTTAACAGATTACCGACAGCAGCTACTTGTATGAATATGCTAAAGATTCCACCTTATGGGAGTAAGGAGCAACTGGAGACCAAATTGCTGTACGCTATAAATGCCGGTGCTGGCTTCGACCTGAGTTAA 3102 0.4113 MFFSGDPSTRKRVDLGGRSSKERDRKNLLQQTRLERNKRQWLRQQNTAALKIQKCFRGRKVVRTEQSKLREKFYKIYGKHCQNLARNAFGPDSDFLRQFLYFFNAENIDDVLVLVQICRLLQQFVQESGDVVGLLAGVDYSSTCALVNHRVKQFVYTCILAIHQNRIQLKDQLLLTPGKSNASAVSLLEVLVLLIDTKLPWSCMVVVYLHQNNAFGLLRDIVLTGKDNAENCIYSAKGSSLERVVTVVVHHIGQKPCTCSHIDPRYSFTSQILTIPFLWDVFPNLRLVFATQGLSQHYVHQMAAVVPNLISFLPEDISDEIPTYACLLGNILETAGVTLSQPDCSFDAAIDLAAVATFLLEAHAAHPSLRTFKSRENSMTTEDDMTGDDEVTEVALDRKLEQQICNAIDTCFLLQLTNILFRDISYVNGSDYGPDDREVAAVGAVCGFLYVTLNTLPLERIVTVLAYRTELVPILWSLMKRWSHENKKWLSLSERLSYLSGDAPGWLLPLAVFCPVYKHMLMIVDNEQFYEQEKPLSLKDIRSLIILLRQVLWQLLWVNPPLSANSVKSAPASTASKRQSIEAIQQRVSIVVSELLSQLQDWNNRQEFTSPTDFHADGVNESFISQAVIEKTRANEVLKQAALLVPFTSRVQIFTSQLAAVRQRNESQPVFTRTRFRIRRDHILEDAYDQMSQLSEDDLRGSVRVTFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHLQFFHFLGTLLAKAMFEGILVDLPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKHYKGDISELELYFVIVNNEYGEQNEEELLPGGKSIHVTNENVITFIHLVANHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDVDDLRLHTNYAGGYHSEHYVIEMFWEVLNGFSLENKKKILKFVTGCSRGPLLGFRYLEPSFCIQRAGDDEALNRLPTAATCMNMLKIPPYGSKEQLETKLLYAINAGAGFDLS* 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1178 1033 ProSiteProfiles HECT domain profile. 695 1033 IPR000569 GO:0004842
Dod03g1178 1033 Gene3D Hect, E3 ligase catalytic domain 800 879 - -
Dod03g1178 1033 PANTHER BNAC01G43970D PROTEIN 1 1033 - -
Dod03g1178 1033 SMART hect_3 693 1033 IPR000569 GO:0004842
Dod03g1178 1033 SUPERFAMILY Hect, E3 ligase catalytic domain 668 1027 IPR035983 GO:0004842
Dod03g1178 1033 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Dod03g1178 1033 Pfam HECT-domain (ubiquitin-transferase) 731 1033 IPR000569 GO:0004842
Dod03g1178 1033 Gene3D Hect, E3 ligase catalytic domain 918 1032 - -
Dod03g1178 1033 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 1 1033 IPR044611 GO:0000209|GO:0061630
Dod03g1178 1033 MobiDBLite consensus disorder prediction 1 22 - -
Dod03g1178 1033 Gene3D Hect, E3 ligase catalytic domains 676 914 - -
Dod03g1178 1033 CDD HECTc 681 1031 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1178 Dod-Chr3 14615056 14655713 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1178 K10589 - gmx:100787467 1707.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1178 03 14615056 14655713 Dod03g1178 03 14615056 14655713 ECH
Dod05g2544 05 51683327 51695728 Dod03g1178 03 14615056 14655713 PCT