Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2543 ATGGCGTCTGTGGCTCAGCAATTCAGCGGGTTGAAGTGCTTCCCACTGTCATCATCTTCACGCTTCTCCAAGCCATCAACATTCTCTTGGAGCCACCAAACCCAGAAGCGAGTTCCCCTTACCGTTGTGAACTCAGTGGCAATATCCAATGCACAGAGCAAAGAGAGGCAGAAGCTGAAGGAAATGTTCAATGAAGCCAACGAGAGATGCCGCACTGCTCCCATGGAAGGCGTTTCCTTCACTCTTGAAGACTTCACTGCCGCTCTCGACAAGTATGACTTTGACTCTGAAGTTGGCACCAAGGTTAAAGGTACTGTGTTTGGCACTGATGGTAATGGAGCGCTTGTTGATATTACTGCCAAGTCTTCTGCATACTTGCCTTTACAGGAGGCATGCATCCGCAGGATTAGGCATGTGGAAGAAGCAGGCATTGTACCTGGGTTGAGAGAGGAGTTTTTTATCATTGGTGAAAATGAAGCAGATGATAGCTTGATCTTGAGTTTAAGGTCTCTTCAATACGATCTTGCATGGGAGCGTTGTAGACAACTTCAAGCAGAAGATGTTGTTTTCAAGGGTAAGGTTGTTGGTGCAAACAAAGGTGGAGTGGTGGCTGAGGTGGAAGGCCTTAGAGGGTTTGTTCCATTCTCACAGATATCAACGAAATCAACTGGAGAAGAGCTTCTTGAGAAGGAGATTCCTCTTAAGTTCGTGGAGGTGGATGAGGAACAATCTAGACTTGTTCTAAGCAACCGTAAGGCCATGGCTGACAGCCAGGCACAGCTTGGAATTGGATCAGTAGTCACTGGCTCTGTTCAAAGCCTAAAGCCATATGGTGCCTTCATTGACATTGGTGGAATTAATGGCCTCCTTCATGTCAGTCAGATTAGTCATGACCGTGTAACTGATATTTCAACTGTTCTTCAACCTGGTGATACTCTAAAGGTGATGATCTTAAGTCATGATCGGGAGAGAGGCCGAGTAAGTCTTTCGACAAAAAAATTAGAACCAACACCTGGAGATATGATCCGTAATCCAAAGCTTGTCTTTGAGAAGGCTGAGGAGATGGCTCAAACATTCAGACAAAGAATAGCTCAAGCCGAGGCCATGGCTCGTGCCGACATGCTTAGGTTCCAGCCTGAGAGTGGATTAACTCTTGGCAGTGATGGGATCTTGGGACCACTTGCTTCAGACTTGCCTGAAGAGGGACTCGATATGAGTGAGGTGCCTCCTGCTGCTGAACCATGA 1245 0.4691 MASVAQQFSGLKCFPLSSSSRFSKPSTFSWSHQTQKRVPLTVVNSVAISNAQSKERQKLKEMFNEANERCRTAPMEGVSFTLEDFTAALDKYDFDSEVGTKVKGTVFGTDGNGALVDITAKSSAYLPLQEACIRRIRHVEEAGIVPGLREEFFIIGENEADDSLILSLRSLQYDLAWERCRQLQAEDVVFKGKVVGANKGGVVAEVEGLRGFVPFSQISTKSTGEELLEKEIPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGSVQSLKPYGAFIDIGGINGLLHVSQISHDRVTDISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLGSDGILGPLASDLPEEGLDMSEVPPAAEP* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2543 414 Coils Coil 49 69 - -
Dod05g2543 414 SUPERFAMILY Nucleic acid-binding proteins 263 342 IPR012340 -
Dod05g2543 414 CDD S1_RPS1_repeat_ec1_hs1 99 169 - -
Dod05g2543 414 SUPERFAMILY Nucleic acid-binding proteins 94 195 IPR012340 -
Dod05g2543 414 Pfam S1 RNA binding domain 185 249 IPR003029 GO:0003676
Dod05g2543 414 Pfam S1 RNA binding domain 263 332 IPR003029 GO:0003676
Dod05g2543 414 Gene3D - 82 179 IPR012340 -
Dod05g2543 414 ProSiteProfiles S1 domain profile. 99 169 IPR003029 GO:0003676
Dod05g2543 414 MobiDBLite consensus disorder prediction 384 414 - -
Dod05g2543 414 Gene3D - 180 258 IPR012340 -
Dod05g2543 414 SMART S1_6 262 332 IPR022967 -
Dod05g2543 414 SMART S1_6 185 251 IPR022967 -
Dod05g2543 414 SMART S1_6 97 169 IPR022967 -
Dod05g2543 414 CDD S1_RPS1_repeat_hs4 264 332 - -
Dod05g2543 414 PANTHER 30S RIBOSOMAL PROTEIN S1 1 413 - -
Dod05g2543 414 SUPERFAMILY Nucleic acid-binding proteins 182 255 IPR012340 -
Dod05g2543 414 Coils Coil 349 369 - -
Dod05g2543 414 ProSiteProfiles S1 domain profile. 187 251 IPR003029 GO:0003676
Dod05g2543 414 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 1 413 - -
Dod05g2543 414 CDD S1_RPS1_repeat_ec2_hs2 187 251 - -
Dod05g2543 414 ProSiteProfiles S1 domain profile. 264 332 IPR003029 GO:0003676
Dod05g2543 414 Gene3D - 259 336 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2543 Dod-Chr5 51678861 51682073 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2543 K02945 - gmx:100812847 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2543 05 51678861 51682073 Dod05g2543 05 51678861 51682073 ECH
Dod05g2543 05 51678861 51682073 Dod03g1176 03 14597799 14601163 PCT